Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06675

Experiment: L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06665 and BPHYT_RS06670 are separated by 194 nucleotidesBPHYT_RS06670 and BPHYT_RS06675 are separated by 20 nucleotidesBPHYT_RS06675 and BPHYT_RS06680 are separated by 17 nucleotides BPHYT_RS06665: BPHYT_RS06665 - NADH-quinone oxidoreductase subunit I, at 1,511,467 to 1,511,955 _RS06665 BPHYT_RS06670: BPHYT_RS06670 - NADH:ubiquinone oxidoreductase subunit J, at 1,512,150 to 1,512,842 _RS06670 BPHYT_RS06675: BPHYT_RS06675 - NADH-quinone oxidoreductase subunit K, at 1,512,863 to 1,513,168 _RS06675 BPHYT_RS06680: BPHYT_RS06680 - NADH:ubiquinone oxidoreductase subunit L, at 1,513,186 to 1,515,273 _RS06680 Position (kb) 1512 1513 1514Strain fitness (log2 ratio) -2 -1 0 1at 1511.970 kb on + strandat 1511.975 kb on + strandat 1512.131 kb on + strandat 1512.830 kb on + strandat 1512.855 kb on + strandat 1513.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine
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1,511,970 + -1.1
1,511,975 + -0.5
1,512,131 + +0.3
1,512,830 + -1.6
1,512,855 + -1.3
1,513,166 + -1.9

Or see this region's nucleotide sequence