Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18130

Experiment: Recovery broth with Bicyclomycin 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Bicyclomycin 0.1 mM
1,852,219	+				+0.4
1,852,219	+				+0.0
1,852,219	+				-0.4
1,852,219	+				+0.2
1,852,219	+				-0.3
1,852,219	+				-0.3
1,852,224	+				+1.6
1,852,227	-				+0.8
1,852,227	-				+0.1
1,852,227	-				-0.5
1,852,227	-				-0.0
1,852,227	-				-0.2
1,852,227	-				+0.0
1,852,227	-				+0.0
1,852,227	-				-0.3
1,852,227	-				+1.8
1,852,227	-				-1.0
1,852,229	+				+0.2
1,852,229	-				-1.0
1,852,237	-				-0.6
1,852,243	+				-0.0
1,852,243	+				+0.0
1,852,255	+				+0.4
1,852,287	+				+0.6
1,852,295	-				+1.8
1,852,310	+				+0.5
1,852,318	-				+0.2
1,852,320	+				+1.2
1,852,433	+				-0.3
1,852,435	-				+0.3
1,852,446	-		BBR_RS18125	0.10	+0.5
1,852,451	-		BBR_RS18125	0.11	+0.9
1,852,461	+		BBR_RS18125	0.13	-0.2
1,852,461	+		BBR_RS18125	0.13	-0.2
1,852,461	+		BBR_RS18125	0.13	-0.7
1,852,461	+		BBR_RS18125	0.13	-1.0
1,852,469	-		BBR_RS18125	0.15	-0.4
1,852,469	-		BBR_RS18125	0.15	-0.3
1,852,469	-		BBR_RS18125	0.15	-0.4
1,852,469	-		BBR_RS18125	0.15	+1.0
1,852,469	-		BBR_RS18125	0.15	-0.0
1,852,469	-		BBR_RS18125	0.15	-0.6
1,852,469	-		BBR_RS18125	0.15	-0.8
1,852,475	+		BBR_RS18125	0.16	+0.0
1,852,483	-		BBR_RS18125	0.17	+0.2
1,852,483	-		BBR_RS18125	0.17	+0.7
1,852,485	-		BBR_RS18125	0.17	-0.0
1,852,522	-		BBR_RS18125	0.24	+0.2
1,852,530	+		BBR_RS18125	0.26	+0.1
1,852,559	-		BBR_RS18125	0.31	-0.6
1,852,578	-		BBR_RS18125	0.35	+0.1
1,852,644	+		BBR_RS18125	0.47	+0.2
1,852,663	+		BBR_RS18125	0.50	+0.9
1,852,672	-		BBR_RS18125	0.52	+0.9
1,852,698	-		BBR_RS18125	0.57	+0.3
1,852,729	-		BBR_RS18125	0.62	+0.4
1,852,735	+		BBR_RS18125	0.64	+0.9
1,852,738	+		BBR_RS18125	0.64	-0.2
1,852,740	+		BBR_RS18125	0.64	+0.8
1,852,795	+		BBR_RS18125	0.75	+0.1
1,852,804	-		BBR_RS18125	0.76	+1.2
1,852,804	-		BBR_RS18125	0.76	-0.0
1,852,818	+		BBR_RS18125	0.79	+1.0
1,852,818	+		BBR_RS18125	0.79	+1.3
1,852,818	+		BBR_RS18125	0.79	+0.2
1,852,818	+		BBR_RS18125	0.79	+0.1
1,852,818	+		BBR_RS18125	0.79	+0.3
1,852,818	+		BBR_RS18125	0.79	-0.1
1,852,826	-		BBR_RS18125	0.80	-0.1
1,852,826	-		BBR_RS18125	0.80	+1.1
1,852,826	-		BBR_RS18125	0.80	-0.1
1,852,826	-		BBR_RS18125	0.80	-0.8
1,852,828	+		BBR_RS18125	0.81	-0.1
1,852,856	+		BBR_RS18125	0.86	-0.4
1,852,856	+		BBR_RS18125	0.86	-0.1
1,852,864	-		BBR_RS18125	0.87	+0.0
1,852,888	-				-0.1
1,852,888	-				+0.1
1,852,909	+				+0.7
1,852,973	+				-0.3
1,852,981	-				+0.2
1,853,009	-				+0.2
1,853,032	+				+0.6
1,853,074	+				-0.3
1,853,074	+				-0.7
1,853,074	+				-0.6
1,853,077	-				+0.6
1,853,077	-				-0.7
1,853,077	-				+0.5
1,853,077	-				-0.0
1,853,128	-				+0.3
1,853,142	-				+0.4
1,853,145	+				+1.3
1,853,145	+				-0.5
1,853,145	+				-0.3
1,853,152	+				-0.3
1,853,153	-				-0.5
1,853,153	-				+0.3
1,853,153	-				+0.7
1,853,153	-				+0.5
1,853,153	-				+0.3
1,853,241	+				+1.8
1,853,260	+				+2.0
1,853,275	-		BBR_RS18130	0.10	+1.3
1,853,320	-		BBR_RS18130	0.15	+2.6
1,853,348	+		BBR_RS18130	0.18	+2.2
1,853,353	+		BBR_RS18130	0.19	+2.6
1,853,353	+		BBR_RS18130	0.19	+2.1
1,853,361	-		BBR_RS18130	0.19	+2.2
1,853,449	-		BBR_RS18130	0.29	+2.4
1,853,462	-		BBR_RS18130	0.30	+2.5
1,853,462	-		BBR_RS18130	0.30	+2.3
1,853,472	-		BBR_RS18130	0.31	+2.6
1,853,472	-		BBR_RS18130	0.31	+1.5
1,853,472	-		BBR_RS18130	0.31	+2.6
1,853,498	+		BBR_RS18130	0.34	+0.6
1,853,503	+		BBR_RS18130	0.34	+2.2
1,853,504	-		BBR_RS18130	0.34	+2.5
1,853,504	-		BBR_RS18130	0.34	+1.9
1,853,505	+		BBR_RS18130	0.34	+0.8
1,853,535	-		BBR_RS18130	0.38	+2.3
1,853,571	+		BBR_RS18130	0.41	+2.7
1,853,571	-		BBR_RS18130	0.41	+2.2
1,853,574	+		BBR_RS18130	0.42	+1.5
1,853,588	-		BBR_RS18130	0.43	+2.4
1,853,661	-		BBR_RS18130	0.51	+1.9
1,853,677	-		BBR_RS18130	0.53	+2.3
1,853,679	+		BBR_RS18130	0.53	+1.8
1,853,681	+		BBR_RS18130	0.53	+1.7
1,853,681	+		BBR_RS18130	0.53	+2.6
1,853,681	+		BBR_RS18130	0.53	+1.6
1,853,687	-		BBR_RS18130	0.54	+2.6
1,853,687	-		BBR_RS18130	0.54	+2.2
1,853,687	-		BBR_RS18130	0.54	+2.3
1,853,687	-		BBR_RS18130	0.54	+2.0
1,853,705	+		BBR_RS18130	0.56	+2.7
1,853,711	+		BBR_RS18130	0.56	+2.0
1,853,719	-		BBR_RS18130	0.57	+2.5
1,853,724	-		BBR_RS18130	0.58	+2.7
1,853,742	-		BBR_RS18130	0.59	+1.3
1,853,743	+		BBR_RS18130	0.60	+2.4
1,853,748	+		BBR_RS18130	0.60	+0.8
1,853,748	+		BBR_RS18130	0.60	+1.6
1,853,751	-		BBR_RS18130	0.60	+1.9
1,853,753	+		BBR_RS18130	0.61	+2.0
1,853,753	+		BBR_RS18130	0.61	+1.5
1,853,756	-		BBR_RS18130	0.61	+2.3
1,853,758	+		BBR_RS18130	0.61	+2.2
1,853,758	+		BBR_RS18130	0.61	+2.3
1,853,758	+		BBR_RS18130	0.61	+2.6
1,853,761	-		BBR_RS18130	0.61	+1.8
1,853,761	-		BBR_RS18130	0.61	+0.2
1,853,766	-		BBR_RS18130	0.62	+2.1
1,853,804	+		BBR_RS18130	0.66	+2.3
1,853,819	+		BBR_RS18130	0.68	+1.8
1,853,819	+		BBR_RS18130	0.68	+2.6
1,853,824	-		BBR_RS18130	0.68	+2.4
1,853,869	-		BBR_RS18130	0.73	+0.9
1,853,878	+		BBR_RS18130	0.74	+1.9
1,853,879	-		BBR_RS18130	0.74	+2.4
1,853,892	+		BBR_RS18130	0.75	+1.3
1,853,894	+		BBR_RS18130	0.75	+1.6
1,853,900	-		BBR_RS18130	0.76	+1.8
1,853,912	-		BBR_RS18130	0.77	+1.9
1,853,916	+		BBR_RS18130	0.78	+1.6
1,853,973	-		BBR_RS18130	0.84	+1.7
1,853,980	-		BBR_RS18130	0.84	+2.3
1,853,985	+		BBR_RS18130	0.85	+2.1
1,854,031	+		BBR_RS18130	0.90	+2.0
1,854,042	+				+3.2
1,854,042	+				+1.5
1,854,042	+				+2.3
1,854,059	+				+1.6
1,854,059	+				+1.6
1,854,074	+				+2.4
1,854,074	+				+2.5
1,854,098	-				+0.0
1,854,113	+				+1.9
1,854,155	+		BBR_RS18135	0.12	-0.5
1,854,155	+		BBR_RS18135	0.12	+0.3
1,854,164	+		BBR_RS18135	0.16	+0.3
1,854,177	-		BBR_RS18135	0.23	-0.6
1,854,192	-		BBR_RS18135	0.30	-0.1
1,854,211	-		BBR_RS18135	0.40	+0.0
1,854,233	+		BBR_RS18135	0.51	-0.2
1,854,353	-				-0.3
1,854,364	-				-1.1
1,854,424	+		BBR_RS18140	0.19	+1.2
1,854,445	-		BBR_RS18140	0.47	+0.7
1,854,451	-		BBR_RS18140	0.55	-1.0
1,854,527	+				+0.2
1,854,540	-				-0.5
1,854,540	-				-0.7
1,854,540	-				-0.6
1,854,591	+				+0.3
1,854,637	+				+1.2
1,854,637	+				-0.4
1,854,637	+				-0.2
1,854,637	+				-0.3
1,854,637	-				+0.6
1,854,639	+				-1.4
1,854,639	+				+0.6
1,854,639	+				-0.8
1,854,639	+				+0.5
1,854,642	+				-0.9
1,854,645	-				+0.8
1,854,645	-				+1.1
1,854,645	-				-0.2
1,854,645	-				-0.2
1,854,645	-				-1.2
1,854,645	-				+0.6
1,854,645	-				+0.2
1,854,647	-				-0.6
1,854,647	-				-0.8
1,854,647	-				+1.0
1,854,647	-				+1.0
1,854,647	-				-0.9
1,854,647	-				-0.4
1,854,693	+				+0.7
1,854,694	-				-0.0
1,854,696	-				+0.1
1,854,731	-				+0.1
1,854,736	-				-1.8
1,854,746	+				-0.9
1,854,749	-				+0.6
1,854,750	+				-0.3
1,854,753	+				+0.6
1,854,758	+				-1.2
1,854,761	-				+0.8
1,854,771	-				-0.1
1,854,773	+				-1.4
1,854,773	+				-0.7
1,854,773	+				-1.0
1,854,773	+				-1.8
1,854,776	-				+0.6
1,854,781	-				+1.1
1,854,824	-				+0.5
1,854,866	+		BBR_RS18145	0.11	-0.8
1,854,874	+		BBR_RS18145	0.12	+0.7
1,854,888	+		BBR_RS18145	0.12	+0.4
1,854,888	+		BBR_RS18145	0.12	+0.6
1,854,891	-		BBR_RS18145	0.13	+0.1
1,854,925	+		BBR_RS18145	0.15	+1.6
1,854,925	-		BBR_RS18145	0.15	+0.5
1,854,954	-		BBR_RS18145	0.16	+0.9
1,855,016	-		BBR_RS18145	0.20	+0.5
1,855,018	-		BBR_RS18145	0.20	-0.0
1,855,018	-		BBR_RS18145	0.20	+0.0
1,855,018	-		BBR_RS18145	0.20	+0.5
1,855,037	-		BBR_RS18145	0.21	+0.4
1,855,043	-		BBR_RS18145	0.21	+0.3
1,855,043	-		BBR_RS18145	0.21	-0.6
1,855,047	-		BBR_RS18145	0.21	-0.1
1,855,078	-		BBR_RS18145	0.23	+0.1
1,855,080	+		BBR_RS18145	0.23	-0.5
1,855,085	+		BBR_RS18145	0.23	+0.8
1,855,088	-		BBR_RS18145	0.24	+0.2
1,855,088	-		BBR_RS18145	0.24	-0.1
1,855,095	+		BBR_RS18145	0.24	-0.2
1,855,101	+		BBR_RS18145	0.24	-0.3
1,855,103	-		BBR_RS18145	0.24	+1.2
1,855,103	-		BBR_RS18145	0.24	+0.5
1,855,106	+		BBR_RS18145	0.25	+1.1
1,855,109	-		BBR_RS18145	0.25	+1.6
1,855,114	-		BBR_RS18145	0.25	-0.8
1,855,114	-		BBR_RS18145	0.25	-0.2
1,855,124	-		BBR_RS18145	0.26	+0.5
1,855,125	+		BBR_RS18145	0.26	+0.5
1,855,125	+		BBR_RS18145	0.26	+0.1