Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2925

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsB and DvMF_2925 are separated by 327 nucleotidesDvMF_2925 and DvMF_2926 are separated by 149 nucleotides DvMF_2924: rpsB - 30S ribosomal protein S2 (RefSeq), at 3,693,970 to 3,694,785 rpsB DvMF_2925: DvMF_2925 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase (RefSeq), at 3,695,113 to 3,695,895 _2925 DvMF_2926: DvMF_2926 - beta-lactamase domain protein (RefSeq), at 3,696,045 to 3,697,706 _2926 Position (kb) 3695 3696Strain fitness (log2 ratio) -2 -1 0 1at 3695.042 kb on - strandat 3695.153 kb on - strandat 3695.153 kb on - strandat 3695.178 kb on + strandat 3695.360 kb on - strand, within DvMF_2925at 3695.365 kb on - strand, within DvMF_2925at 3695.434 kb on - strand, within DvMF_2925at 3695.509 kb on + strand, within DvMF_2925at 3695.697 kb on + strand, within DvMF_2925at 3695.912 kb on + strandat 3696.174 kb on + strandat 3696.258 kb on + strand, within DvMF_2926at 3696.266 kb on - strand, within DvMF_2926at 3696.369 kb on - strand, within DvMF_2926at 3696.423 kb on + strand, within DvMF_2926at 3696.442 kb on - strand, within DvMF_2926at 3696.602 kb on + strand, within DvMF_2926at 3696.793 kb on + strand, within DvMF_2926

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,695,042 - -0.0
3,695,153 - -1.3
3,695,153 - -0.5
3,695,178 + -0.6
3,695,360 - DvMF_2925 0.32 -0.3
3,695,365 - DvMF_2925 0.32 -0.8
3,695,434 - DvMF_2925 0.41 -0.2
3,695,509 + DvMF_2925 0.51 -0.4
3,695,697 + DvMF_2925 0.75 -0.6
3,695,912 + -0.6
3,696,174 + -1.4
3,696,258 + DvMF_2926 0.13 -1.9
3,696,266 - DvMF_2926 0.13 -1.0
3,696,369 - DvMF_2926 0.19 -1.7
3,696,423 + DvMF_2926 0.23 -1.8
3,696,442 - DvMF_2926 0.24 +0.2
3,696,602 + DvMF_2926 0.34 -0.1
3,696,793 + DvMF_2926 0.45 -1.2

Or see this region's nucleotide sequence