Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2788

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2787 and DvMF_2788 are separated by 151 nucleotidesDvMF_2788 and DvMF_2789 are separated by 650 nucleotides DvMF_2787: DvMF_2787 - extracellular solute-binding protein family 3 (RefSeq), at 3,529,175 to 3,530,002 _2787 DvMF_2788: DvMF_2788 - ABC transporter related (RefSeq), at 3,530,154 to 3,530,885 _2788 DvMF_2789: DvMF_2789 - histidine kinase (RefSeq), at 3,531,536 to 3,532,951 _2789 Position (kb) 3530 3531Strain fitness (log2 ratio) -1 0 1at 3529.735 kb on + strand, within DvMF_2787at 3529.942 kb on - strandat 3530.227 kb on - strandat 3530.319 kb on + strand, within DvMF_2788at 3530.321 kb on - strand, within DvMF_2788at 3530.327 kb on - strand, within DvMF_2788at 3530.358 kb on - strand, within DvMF_2788at 3530.797 kb on + strand, within DvMF_2788at 3530.859 kb on - strandat 3530.867 kb on - strandat 3531.092 kb on - strandat 3531.374 kb on + strandat 3531.441 kb on + strandat 3531.647 kb on + strandat 3531.720 kb on - strand, within DvMF_2789at 3531.744 kb on - strand, within DvMF_2789at 3531.744 kb on - strand, within DvMF_2789at 3531.826 kb on - strand, within DvMF_2789at 3531.879 kb on + strand, within DvMF_2789

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,529,735 + DvMF_2787 0.68 -0.9
3,529,942 - -0.0
3,530,227 - -0.8
3,530,319 + DvMF_2788 0.23 -0.8
3,530,321 - DvMF_2788 0.23 -0.9
3,530,327 - DvMF_2788 0.24 -0.6
3,530,358 - DvMF_2788 0.28 -0.4
3,530,797 + DvMF_2788 0.88 -0.7
3,530,859 - -1.0
3,530,867 - -1.1
3,531,092 - -0.6
3,531,374 + -0.2
3,531,441 + -0.5
3,531,647 + +0.2
3,531,720 - DvMF_2789 0.13 -0.3
3,531,744 - DvMF_2789 0.15 -0.8
3,531,744 - DvMF_2789 0.15 -0.4
3,531,826 - DvMF_2789 0.20 -0.5
3,531,879 + DvMF_2789 0.24 +0.1

Or see this region's nucleotide sequence