Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2606

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2605 and DvMF_2606 are separated by 513 nucleotidesDvMF_2606 and DvMF_2607 are separated by 670 nucleotides DvMF_2605: DvMF_2605 - UspA domain protein (RefSeq), at 3,292,666 to 3,293,109 _2605 DvMF_2606: DvMF_2606 - large conductance mechanosensitive channel protein (RefSeq), at 3,293,623 to 3,294,069 _2606 DvMF_2607: DvMF_2607 - Extracellular ligand-binding receptor (RefSeq), at 3,294,740 to 3,295,858 _2607 Position (kb) 3293 3294 3295Strain fitness (log2 ratio) -1 0 1at 3292.761 kb on - strand, within DvMF_2605at 3292.866 kb on + strand, within DvMF_2605at 3293.024 kb on + strand, within DvMF_2605at 3293.071 kb on - strandat 3293.427 kb on + strandat 3293.427 kb on + strandat 3293.435 kb on - strandat 3293.484 kb on + strandat 3293.489 kb on + strandat 3293.784 kb on - strand, within DvMF_2606at 3293.931 kb on + strand, within DvMF_2606at 3294.017 kb on + strand, within DvMF_2606at 3294.228 kb on - strandat 3294.978 kb on - strand, within DvMF_2607

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,292,761 - DvMF_2605 0.21 -0.4
3,292,866 + DvMF_2605 0.45 -1.0
3,293,024 + DvMF_2605 0.81 +0.2
3,293,071 - -0.8
3,293,427 + +0.2
3,293,427 + -1.2
3,293,435 - -0.4
3,293,484 + -1.2
3,293,489 + -0.1
3,293,784 - DvMF_2606 0.36 -1.2
3,293,931 + DvMF_2606 0.69 -1.2
3,294,017 + DvMF_2606 0.88 -1.1
3,294,228 - -0.1
3,294,978 - DvMF_2607 0.21 -1.2

Or see this region's nucleotide sequence