Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1543

Experiment: rich MoYLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1542 and DvMF_1543 are separated by 346 nucleotidesDvMF_1543 and DvMF_1544 are separated by 559 nucleotides DvMF_1542: DvMF_1542 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,903,359 to 1,904,237 _1542 DvMF_1543: DvMF_1543 - rare lipoprotein A (RefSeq), at 1,904,584 to 1,905,237 _1543 DvMF_1544: DvMF_1544 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,905,797 to 1,908,016 _1544 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -1 0 1at 1903.755 kb on + strand, within DvMF_1542at 1903.781 kb on - strand, within DvMF_1542at 1903.797 kb on - strand, within DvMF_1542at 1903.808 kb on - strand, within DvMF_1542at 1903.888 kb on + strand, within DvMF_1542at 1903.896 kb on - strand, within DvMF_1542at 1904.249 kb on - strandat 1904.447 kb on - strandat 1904.936 kb on + strand, within DvMF_1543at 1905.325 kb on + strandat 1905.481 kb on + strandat 1905.534 kb on - strandat 1905.554 kb on + strandat 1905.586 kb on + strandat 1905.592 kb on - strandat 1905.701 kb on - strandat 1905.890 kb on - strandat 1906.048 kb on + strand, within DvMF_1544at 1906.157 kb on + strand, within DvMF_1544at 1906.176 kb on + strand, within DvMF_1544at 1906.220 kb on + strand, within DvMF_1544at 1906.233 kb on + strand, within DvMF_1544

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
remove
1,903,755 + DvMF_1542 0.45 -0.5
1,903,781 - DvMF_1542 0.48 -0.4
1,903,797 - DvMF_1542 0.50 -0.9
1,903,808 - DvMF_1542 0.51 -0.3
1,903,888 + DvMF_1542 0.60 -0.9
1,903,896 - DvMF_1542 0.61 -0.5
1,904,249 - -0.2
1,904,447 - -0.6
1,904,936 + DvMF_1543 0.54 -0.7
1,905,325 + -0.5
1,905,481 + -0.5
1,905,534 - -0.5
1,905,554 + -0.3
1,905,586 + -0.4
1,905,592 - -0.5
1,905,701 - -0.5
1,905,890 - -0.4
1,906,048 + DvMF_1544 0.11 -0.6
1,906,157 + DvMF_1544 0.16 -0.9
1,906,176 + DvMF_1544 0.17 -0.4
1,906,220 + DvMF_1544 0.19 -0.8
1,906,233 + DvMF_1544 0.20 -0.8

Or see this region's nucleotide sequence