Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1300

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1298 and DvMF_1299 overlap by 4 nucleotidesDvMF_1299 and DvMF_1300 overlap by 1 nucleotidesDvMF_1300 and DvMF_1301 overlap by 14 nucleotides DvMF_1298: DvMF_1298 - phage tail tape measure protein, TP901 family (RefSeq), at 1,587,062 to 1,589,407 _1298 DvMF_1299: DvMF_1299 - hypothetical protein (RefSeq), at 1,589,404 to 1,589,949 _1299 DvMF_1300: DvMF_1300 - hypothetical protein (RefSeq), at 1,589,949 to 1,590,749 _1300 DvMF_1301: DvMF_1301 - baseplate assembly protein, putative (RefSeq), at 1,590,736 to 1,591,461 _1301 Position (kb) 1589 1590 1591Strain fitness (log2 ratio) -2 -1 0 1at 1589.009 kb on - strand, within DvMF_1298at 1589.131 kb on - strand, within DvMF_1298at 1589.190 kb on - strandat 1589.226 kb on - strandat 1589.316 kb on + strandat 1589.417 kb on + strandat 1589.579 kb on + strand, within DvMF_1299at 1589.587 kb on - strand, within DvMF_1299at 1589.622 kb on + strand, within DvMF_1299at 1589.854 kb on + strand, within DvMF_1299at 1589.879 kb on - strand, within DvMF_1299at 1590.058 kb on + strand, within DvMF_1300at 1590.254 kb on + strand, within DvMF_1300at 1590.462 kb on - strand, within DvMF_1300at 1590.507 kb on + strand, within DvMF_1300at 1590.509 kb on + strand, within DvMF_1300at 1590.929 kb on + strand, within DvMF_1301at 1591.014 kb on - strand, within DvMF_1301at 1591.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,589,009 - DvMF_1298 0.83 -0.7
1,589,131 - DvMF_1298 0.88 -0.5
1,589,190 - -1.1
1,589,226 - -0.6
1,589,316 + -1.8
1,589,417 + -0.8
1,589,579 + DvMF_1299 0.32 -0.6
1,589,587 - DvMF_1299 0.34 -0.9
1,589,622 + DvMF_1299 0.40 -0.8
1,589,854 + DvMF_1299 0.82 -0.4
1,589,879 - DvMF_1299 0.87 -0.2
1,590,058 + DvMF_1300 0.14 -0.9
1,590,254 + DvMF_1300 0.38 -0.1
1,590,462 - DvMF_1300 0.64 -0.7
1,590,507 + DvMF_1300 0.70 -1.7
1,590,509 + DvMF_1300 0.70 -0.8
1,590,929 + DvMF_1301 0.27 -1.2
1,591,014 - DvMF_1301 0.38 -1.1
1,591,571 - -0.6

Or see this region's nucleotide sequence