Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1226

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1225 and DvMF_1226 are separated by 237 nucleotidesDvMF_1226 and DvMF_1227 are separated by 582 nucleotides DvMF_1225: DvMF_1225 - signal transduction histidine kinase, LytS (RefSeq), at 1,509,712 to 1,511,523 _1225 DvMF_1226: DvMF_1226 - carbon starvation protein CstA (RefSeq), at 1,511,761 to 1,513,164 _1226 DvMF_1227: DvMF_1227 - carbon starvation protein CstA (RefSeq), at 1,513,747 to 1,515,558 _1227 Position (kb) 1511 1512 1513 1514Strain fitness (log2 ratio) -1 0 1at 1510.843 kb on + strand, within DvMF_1225at 1511.085 kb on - strand, within DvMF_1225at 1511.248 kb on + strand, within DvMF_1225at 1511.574 kb on - strandat 1511.771 kb on + strandat 1511.873 kb on - strandat 1511.968 kb on + strand, within DvMF_1226at 1511.983 kb on - strand, within DvMF_1226at 1512.516 kb on - strand, within DvMF_1226at 1512.594 kb on + strand, within DvMF_1226at 1512.826 kb on + strand, within DvMF_1226at 1512.861 kb on - strand, within DvMF_1226at 1512.870 kb on + strand, within DvMF_1226at 1513.166 kb on - strandat 1513.242 kb on - strandat 1513.252 kb on - strandat 1513.323 kb on - strandat 1513.449 kb on - strandat 1513.983 kb on + strand, within DvMF_1227at 1514.032 kb on - strand, within DvMF_1227at 1514.041 kb on + strand, within DvMF_1227at 1514.041 kb on + strand, within DvMF_1227at 1514.061 kb on - strand, within DvMF_1227at 1514.091 kb on - strand, within DvMF_1227at 1514.091 kb on - strand, within DvMF_1227at 1514.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,510,843 + DvMF_1225 0.62 -0.1
1,511,085 - DvMF_1225 0.76 +0.0
1,511,248 + DvMF_1225 0.85 -0.1
1,511,574 - -0.6
1,511,771 + -0.4
1,511,873 - -1.0
1,511,968 + DvMF_1226 0.15 -0.2
1,511,983 - DvMF_1226 0.16 +0.1
1,512,516 - DvMF_1226 0.54 -0.6
1,512,594 + DvMF_1226 0.59 -0.4
1,512,826 + DvMF_1226 0.76 -0.2
1,512,861 - DvMF_1226 0.78 -0.1
1,512,870 + DvMF_1226 0.79 -0.0
1,513,166 - +0.2
1,513,242 - -0.4
1,513,252 - -0.1
1,513,323 - -0.5
1,513,449 - +0.0
1,513,983 + DvMF_1227 0.13 -0.5
1,514,032 - DvMF_1227 0.16 -0.0
1,514,041 + DvMF_1227 0.16 -0.4
1,514,041 + DvMF_1227 0.16 -0.2
1,514,061 - DvMF_1227 0.17 +1.7
1,514,091 - DvMF_1227 0.19 -0.1
1,514,091 - DvMF_1227 0.19 +0.3
1,514,091 - -1.2

Or see this region's nucleotide sequence