Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0993

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0991 and DvMF_0992 are separated by 96 nucleotidesDvMF_0992 and DvMF_0993 are separated by 206 nucleotidesDvMF_0993 and DvMF_0994 are separated by 209 nucleotidesDvMF_0994 and DvMF_0995 are separated by 144 nucleotides DvMF_0991: DvMF_0991 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,204,387 to 1,206,210 _0991 DvMF_0992: DvMF_0992 - hypothetical protein (RefSeq), at 1,206,307 to 1,206,990 _0992 DvMF_0993: DvMF_0993 - transcriptional regulator, Crp/Fnr family (RefSeq), at 1,207,197 to 1,207,886 _0993 DvMF_0994: DvMF_0994 - hypothetical protein (RefSeq), at 1,208,096 to 1,208,602 _0994 DvMF_0995: DvMF_0995 - metal dependent phosphohydrolase (RefSeq), at 1,208,747 to 1,210,003 _0995 Position (kb) 1207 1208Strain fitness (log2 ratio) -1 0 1at 1206.205 kb on + strandat 1206.205 kb on + strandat 1206.293 kb on + strandat 1206.322 kb on - strandat 1206.741 kb on + strand, within DvMF_0992at 1206.749 kb on - strand, within DvMF_0992at 1206.804 kb on + strand, within DvMF_0992at 1206.811 kb on - strand, within DvMF_0992at 1207.157 kb on + strandat 1207.354 kb on + strand, within DvMF_0993at 1207.520 kb on + strand, within DvMF_0993at 1207.545 kb on + strand, within DvMF_0993at 1207.620 kb on - strand, within DvMF_0993at 1207.799 kb on - strand, within DvMF_0993at 1208.259 kb on + strand, within DvMF_0994at 1208.259 kb on + strand, within DvMF_0994at 1208.561 kb on + strandat 1208.729 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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1,206,205 + -0.4
1,206,205 + +0.1
1,206,293 + -0.0
1,206,322 - -0.4
1,206,741 + DvMF_0992 0.63 +0.4
1,206,749 - DvMF_0992 0.65 -0.2
1,206,804 + DvMF_0992 0.73 +0.7
1,206,811 - DvMF_0992 0.74 +0.8
1,207,157 + -0.6
1,207,354 + DvMF_0993 0.23 -0.2
1,207,520 + DvMF_0993 0.47 +0.7
1,207,545 + DvMF_0993 0.50 +1.7
1,207,620 - DvMF_0993 0.61 -0.5
1,207,799 - DvMF_0993 0.87 -0.4
1,208,259 + DvMF_0994 0.32 -0.3
1,208,259 + DvMF_0994 0.32 -0.4
1,208,561 + -1.0
1,208,729 - -0.8

Or see this region's nucleotide sequence