Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0586

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0585 and DvMF_0586 are separated by 120 nucleotidesDvMF_0586 and DvMF_0587 are separated by 543 nucleotides DvMF_0585: DvMF_0585 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 692,854 to 694,632 _0585 DvMF_0586: DvMF_0586 - transcriptional regulator, XRE family (RefSeq), at 694,753 to 695,766 _0586 DvMF_0587: DvMF_0587 - hypothetical protein (RefSeq), at 696,310 to 697,458 _0587 Position (kb) 694 695 696Strain fitness (log2 ratio) -1 0 1at 693.958 kb on - strand, within DvMF_0585at 694.479 kb on + strandat 694.764 kb on + strandat 694.772 kb on - strandat 695.191 kb on - strand, within DvMF_0586at 695.223 kb on - strand, within DvMF_0586at 695.287 kb on + strand, within DvMF_0586at 695.287 kb on + strand, within DvMF_0586at 695.305 kb on - strand, within DvMF_0586at 695.334 kb on + strand, within DvMF_0586at 695.352 kb on + strand, within DvMF_0586at 695.627 kb on + strand, within DvMF_0586at 696.629 kb on + strand, within DvMF_0587

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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693,958 - DvMF_0585 0.62 -0.6
694,479 + -0.1
694,764 + -1.2
694,772 - -0.2
695,191 - DvMF_0586 0.43 -0.4
695,223 - DvMF_0586 0.46 -0.4
695,287 + DvMF_0586 0.53 -0.2
695,287 + DvMF_0586 0.53 -1.1
695,305 - DvMF_0586 0.54 -0.5
695,334 + DvMF_0586 0.57 -0.5
695,352 + DvMF_0586 0.59 -0.4
695,627 + DvMF_0586 0.86 -0.3
696,629 + DvMF_0587 0.28 +1.0

Or see this region's nucleotide sequence