Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3375 and Shew_3376 are separated by 60 nucleotides Shew_3376 and Shew_3377 are separated by 6 nucleotides Shew_3377 and Shew_3378 are separated by 3 nucleotides Shew_3378 and Shew_3379 are separated by 111 nucleotides Shew_3379 and Shew_3380 overlap by 1 nucleotides
Shew_3375: Shew_3375 - 2-polyprenylphenol 6-hydroxylase (RefSeq), at 4,024,205 to 4,025,854
_3375
Shew_3376: Shew_3376 - twin arginine-targeting protein translocase (RefSeq), at 4,025,915 to 4,026,145
_3376
Shew_3377: Shew_3377 - twin-arginine translocation protein, TatB subunit (RefSeq), at 4,026,152 to 4,026,550
_3377
Shew_3378: Shew_3378 - Sec-independent protein translocase, TatC subunit (RefSeq), at 4,026,554 to 4,027,309
_3378
Shew_3379: Shew_3379 - hypothetical protein (RefSeq), at 4,027,421 to 4,027,960
_3379
Shew_3380: Shew_3380 - TatD-related deoxyribonuclease (RefSeq), at 4,027,960 to 4,028,769
_3380
Position (kb) 4026
4027
4028 Strain fitness (log2 ratio) -1
0
1 at 4026.495 kb on - strand, within Shew_3377 at 4026.851 kb on + strand, within Shew_3378 at 4027.007 kb on + strand, within Shew_3378 at 4027.051 kb on - strand, within Shew_3378 at 4027.645 kb on + strand, within Shew_3379 at 4027.653 kb on - strand, within Shew_3379 at 4028.036 kb on - strand at 4028.081 kb on + strand, within Shew_3380 at 4028.142 kb on - strand, within Shew_3380
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,026,495 - Shew_3377 0.86 +1.7 4,026,851 + Shew_3378 0.39 +1.7 4,027,007 + Shew_3378 0.60 +1.0 4,027,051 - Shew_3378 0.66 +1.2 4,027,645 + Shew_3379 0.41 +0.3 4,027,653 - Shew_3379 0.43 -1.1 4,028,036 - -0.0 4,028,081 + Shew_3380 0.15 -0.1 4,028,142 - Shew_3380 0.22 -0.4
Or see this region's nucleotide sequence