Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2908 and Shew_2909 are separated by 64 nucleotides Shew_2909 and Shew_2910 are separated by 87 nucleotides Shew_2910 and Shew_2911 are separated by 189 nucleotides
Shew_2908: Shew_2908 - LysR family transcriptional regulator (RefSeq), at 3,447,269 to 3,448,204
_2908
Shew_2909: Shew_2909 - GCN5-related N-acetyltransferase (RefSeq), at 3,448,269 to 3,448,682
_2909
Shew_2910: Shew_2910 - hypothetical protein (RefSeq), at 3,448,770 to 3,449,012
_2910
Shew_2911: Shew_2911 - HemK family modification methylase (RefSeq), at 3,449,202 to 3,450,044
_2911
Position (kb)
3448
3449
3450 Strain fitness (log2 ratio)
-1
0
1 at 3447.935 kb on + strand, within Shew_2908 at 3447.943 kb on - strand, within Shew_2908 at 3447.970 kb on - strand, within Shew_2908 at 3448.007 kb on + strand, within Shew_2908 at 3448.015 kb on - strand, within Shew_2908 at 3448.015 kb on - strand, within Shew_2908 at 3448.104 kb on - strand, within Shew_2908 at 3448.287 kb on - strand at 3448.648 kb on - strand at 3448.888 kb on - strand, within Shew_2910 at 3449.038 kb on + strand at 3449.038 kb on + strand at 3449.038 kb on + strand at 3449.046 kb on - strand at 3449.046 kb on - strand at 3449.064 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,447,935 + Shew_2908 0.71 +0.1 3,447,943 - Shew_2908 0.72 +0.0 3,447,970 - Shew_2908 0.75 +0.0 3,448,007 + Shew_2908 0.79 +0.1 3,448,015 - Shew_2908 0.80 +0.6 3,448,015 - Shew_2908 0.80 -0.6 3,448,104 - Shew_2908 0.89 +0.0 3,448,287 - -0.0 3,448,648 - +0.2 3,448,888 - Shew_2910 0.49 -0.8 3,449,038 + -1.3 3,449,038 + +0.1 3,449,038 + -0.0 3,449,046 - -0.4 3,449,046 - +0.0 3,449,064 + -1.1
Or see this region's nucleotide sequence