Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2896 and Shew_2897 are separated by 156 nucleotides Shew_2897 and Shew_2898 are separated by 152 nucleotides Shew_2898 and Shew_2899 are separated by 3 nucleotides
Shew_2896: Shew_2896 - sodium:neurotransmitter symporter (RefSeq), at 3,433,919 to 3,435,430
_2896
Shew_2897: Shew_2897 - LysR family transcriptional regulator (RefSeq), at 3,435,587 to 3,436,471
_2897
Shew_2898: Shew_2898 - hypothetical protein (RefSeq), at 3,436,624 to 3,436,983
_2898
Shew_2899: Shew_2899 - glutathione synthetase (RefSeq), at 3,436,987 to 3,438,021
_2899
Position (kb) 3435
3436
3437 Strain fitness (log2 ratio) -1
0
1 at 3434.587 kb on + strand, within Shew_2896 at 3435.014 kb on - strand, within Shew_2896 at 3435.072 kb on - strand, within Shew_2896 at 3436.206 kb on + strand, within Shew_2897 at 3436.243 kb on + strand, within Shew_2897 at 3436.243 kb on + strand, within Shew_2897 at 3436.243 kb on + strand, within Shew_2897 at 3436.251 kb on - strand, within Shew_2897 at 3436.446 kb on - strand at 3436.914 kb on - strand, within Shew_2898 at 3437.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,434,587 + Shew_2896 0.44 -0.0 3,435,014 - Shew_2896 0.72 -0.4 3,435,072 - Shew_2896 0.76 +0.4 3,436,206 + Shew_2897 0.70 +0.7 3,436,243 + Shew_2897 0.74 -1.4 3,436,243 + Shew_2897 0.74 -0.4 3,436,243 + Shew_2897 0.74 -0.4 3,436,251 - Shew_2897 0.75 -0.3 3,436,446 - -0.6 3,436,914 - Shew_2898 0.81 -1.2 3,437,086 - +0.1
Or see this region's nucleotide sequence