Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2533 and Shew_2534 are separated by 97 nucleotides Shew_2534 and Shew_2535 are separated by 226 nucleotides
Shew_2533: Shew_2533 - gluconate transporter (RefSeq), at 2,990,037 to 2,991,395
_2533
Shew_2534: Shew_2534 - glycerate kinase (RefSeq), at 2,991,493 to 2,992,638
_2534
Shew_2535: Shew_2535 - pyridoxal-dependent decarboxylase (RefSeq), at 2,992,865 to 2,994,505
_2535
Position (kb)
2991
2992
2993 Strain fitness (log2 ratio)
-1
0
1 at 2990.495 kb on - strand, within Shew_2533 at 2990.697 kb on - strand, within Shew_2533 at 2990.704 kb on + strand, within Shew_2533 at 2990.707 kb on - strand, within Shew_2533 at 2990.707 kb on - strand, within Shew_2533 at 2990.707 kb on - strand, within Shew_2533 at 2990.707 kb on - strand, within Shew_2533 at 2991.053 kb on - strand, within Shew_2533 at 2991.119 kb on - strand, within Shew_2533 at 2991.292 kb on - strand at 2991.308 kb on + strand at 2991.645 kb on - strand, within Shew_2534 at 2991.795 kb on - strand, within Shew_2534 at 2991.807 kb on - strand, within Shew_2534 at 2991.875 kb on - strand, within Shew_2534 at 2992.336 kb on - strand, within Shew_2534 at 2992.336 kb on - strand, within Shew_2534 at 2992.402 kb on - strand, within Shew_2534 at 2992.402 kb on - strand, within Shew_2534 at 2992.649 kb on + strand at 2992.785 kb on - strand at 2993.619 kb on + strand, within Shew_2535
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,990,495 - Shew_2533 0.34 +0.1 2,990,697 - Shew_2533 0.49 -0.0 2,990,704 + Shew_2533 0.49 -0.1 2,990,707 - Shew_2533 0.49 -0.6 2,990,707 - Shew_2533 0.49 +0.1 2,990,707 - Shew_2533 0.49 +0.2 2,990,707 - Shew_2533 0.49 -0.1 2,991,053 - Shew_2533 0.75 -0.0 2,991,119 - Shew_2533 0.80 +0.4 2,991,292 - +0.4 2,991,308 + +0.2 2,991,645 - Shew_2534 0.13 -0.3 2,991,795 - Shew_2534 0.26 -0.7 2,991,807 - Shew_2534 0.27 -0.5 2,991,875 - Shew_2534 0.33 +0.2 2,992,336 - Shew_2534 0.74 -0.7 2,992,336 - Shew_2534 0.74 -0.1 2,992,402 - Shew_2534 0.79 +0.3 2,992,402 - Shew_2534 0.79 +0.1 2,992,649 + +0.5 2,992,785 - +0.1 2,993,619 + Shew_2535 0.46 +0.1
Or see this region's nucleotide sequence