Strain Fitness in Shewanella loihica PV-4 around Shew_2428

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2427 and Shew_2428 overlap by 1 nucleotidesShew_2428 and Shew_2429 are separated by 0 nucleotidesShew_2429 and Shew_2430 overlap by 13 nucleotides Shew_2427: Shew_2427 - ATPase (RefSeq), at 2,853,173 to 2,854,129 _2427 Shew_2428: Shew_2428 - hypothetical protein (RefSeq), at 2,854,129 to 2,855,058 _2428 Shew_2429: Shew_2429 - hypothetical protein (RefSeq), at 2,855,059 to 2,855,553 _2429 Shew_2430: Shew_2430 - von Willebrand factor, type A (RefSeq), at 2,855,541 to 2,856,560 _2430 Position (kb) 2854 2855 2856Strain fitness (log2 ratio) -1 0 1at 2853.398 kb on - strand, within Shew_2427at 2853.646 kb on + strand, within Shew_2427at 2853.752 kb on - strand, within Shew_2427at 2854.742 kb on - strand, within Shew_2428at 2854.911 kb on - strand, within Shew_2428at 2855.116 kb on - strand, within Shew_2429at 2855.525 kb on - strandat 2855.546 kb on - strandat 2855.805 kb on + strand, within Shew_2430

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,853,398 - Shew_2427 0.24 +0.5
2,853,646 + Shew_2427 0.49 +0.2
2,853,752 - Shew_2427 0.61 +0.3
2,854,742 - Shew_2428 0.66 -0.6
2,854,911 - Shew_2428 0.84 -0.4
2,855,116 - Shew_2429 0.12 -0.6
2,855,525 - -0.1
2,855,546 - -0.2
2,855,805 + Shew_2430 0.26 -0.1

Or see this region's nucleotide sequence