Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2283 and Shew_2284 are separated by 288 nucleotides Shew_2284 and Shew_2285 are separated by 31 nucleotides Shew_2285 and Shew_2286 overlap by 17 nucleotides
Shew_2283: Shew_2283 - porin (RefSeq), at 2,667,624 to 2,668,781
_2283
Shew_2284: Shew_2284 - hypothetical protein (RefSeq), at 2,669,070 to 2,669,291
_2284
Shew_2285: Shew_2285 - UDP-glucose 4-epimerase (RefSeq), at 2,669,323 to 2,670,378
_2285
Shew_2286: Shew_2286 - SSS family solute/sodium (Na+) symporter (RefSeq), at 2,670,362 to 2,671,921
_2286
Position (kb)
2669
2670
2671 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2668.638 kb on + strand, within Shew_2283 at 2668.638 kb on + strand, within Shew_2283 at 2668.737 kb on + strand at 2669.009 kb on + strand at 2669.010 kb on - strand at 2669.067 kb on - strand at 2669.156 kb on + strand, within Shew_2284 at 2669.164 kb on - strand, within Shew_2284 at 2669.170 kb on + strand, within Shew_2284 at 2669.179 kb on + strand, within Shew_2284 at 2669.365 kb on + strand at 2669.799 kb on + strand, within Shew_2285 at 2669.848 kb on - strand, within Shew_2285 at 2670.041 kb on - strand, within Shew_2285 at 2670.522 kb on - strand, within Shew_2286 at 2670.541 kb on - strand, within Shew_2286
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,668,638 + Shew_2283 0.88 -0.0 2,668,638 + Shew_2283 0.88 -0.8 2,668,737 + +0.7 2,669,009 + +0.4 2,669,010 - +0.2 2,669,067 - -0.5 2,669,156 + Shew_2284 0.39 -0.6 2,669,164 - Shew_2284 0.42 -0.2 2,669,170 + Shew_2284 0.45 -0.1 2,669,179 + Shew_2284 0.49 -0.3 2,669,365 + +0.1 2,669,799 + Shew_2285 0.45 -0.4 2,669,848 - Shew_2285 0.50 +2.9 2,670,041 - Shew_2285 0.68 -0.0 2,670,522 - Shew_2286 0.10 -0.0 2,670,541 - Shew_2286 0.11 -0.3
Or see this region's nucleotide sequence