Strain Fitness in Shewanella loihica PV-4 around Shew_1912

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1911 and Shew_1912 are separated by 106 nucleotidesShew_1912 and Shew_1913 are separated by 28 nucleotidesShew_1913 and Shew_1914 are separated by 302 nucleotides Shew_1911: Shew_1911 - hypothetical protein (RefSeq), at 2,209,370 to 2,210,011 _1911 Shew_1912: Shew_1912 - deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq), at 2,210,118 to 2,211,443 _1912 Shew_1913: Shew_1913 - hypothetical protein (RefSeq), at 2,211,472 to 2,212,059 _1913 Shew_1914: Shew_1914 - aminotransferase AlaT (RefSeq), at 2,212,362 to 2,213,576 _1914 Position (kb) 2210 2211 2212Strain fitness (log2 ratio) -1 0 1at 2209.300 kb on + strandat 2209.307 kb on + strandat 2210.793 kb on - strand, within Shew_1912at 2212.020 kb on - strandat 2212.375 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,209,300 + -0.5
2,209,307 + +0.4
2,210,793 - Shew_1912 0.51 -0.5
2,212,020 - -0.3
2,212,375 - +1.1

Or see this region's nucleotide sequence