Strain Fitness in Shewanella loihica PV-4 around Shew_1646

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1645 and Shew_1646 are separated by 476 nucleotidesShew_1646 and Shew_1647 are separated by 111 nucleotides Shew_1645: Shew_1645 - sigma-54 dependent trancsriptional regulator (RefSeq), at 1,886,174 to 1,887,544 _1645 Shew_1646: Shew_1646 - beta-lactamase domain-containing protein (RefSeq), at 1,888,021 to 1,888,899 _1646 Shew_1647: Shew_1647 - acriflavin resistance protein (RefSeq), at 1,889,011 to 1,892,058 _1647 Position (kb) 1888 1889Strain fitness (log2 ratio) -1 0 1at 1887.389 kb on + strand, within Shew_1645at 1887.397 kb on - strand, within Shew_1645at 1887.735 kb on - strandat 1887.921 kb on + strandat 1887.979 kb on - strandat 1888.604 kb on + strand, within Shew_1646at 1888.861 kb on + strandat 1889.016 kb on - strandat 1889.016 kb on - strandat 1889.016 kb on - strandat 1889.059 kb on - strandat 1889.459 kb on - strand, within Shew_1647

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,887,389 + Shew_1645 0.89 -0.2
1,887,397 - Shew_1645 0.89 +0.2
1,887,735 - -0.1
1,887,921 + -0.2
1,887,979 - -0.5
1,888,604 + Shew_1646 0.66 -0.3
1,888,861 + -0.4
1,889,016 - +0.1
1,889,016 - -0.9
1,889,016 - -0.1
1,889,059 - -0.2
1,889,459 - Shew_1647 0.15 -0.3

Or see this region's nucleotide sequence