Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1458 and Shew_1459 are separated by 398 nucleotides Shew_1459 and Shew_1460 are separated by 84 nucleotides Shew_1460 and Shew_1461 are separated by 191 nucleotides
Shew_1458: Shew_1458 - serine/threonine transporter SstT (RefSeq), at 1,680,465 to 1,681,688
_1458
Shew_1459: Shew_1459 - hypothetical protein (RefSeq), at 1,682,087 to 1,682,491
_1459
Shew_1460: Shew_1460 - pseudouridine synthase (RefSeq), at 1,682,576 to 1,683,229
_1460
Shew_1461: Shew_1461 - zinc carboxypeptidase-related protein (RefSeq), at 1,683,421 to 1,684,398
_1461
Position (kb) 1682
1683 Strain fitness (log2 ratio) -1
0
1 at 1681.129 kb on + strand, within Shew_1458 at 1681.129 kb on + strand, within Shew_1458 at 1681.263 kb on + strand, within Shew_1458 at 1681.357 kb on - strand, within Shew_1458 at 1681.614 kb on + strand at 1681.847 kb on - strand at 1681.958 kb on - strand at 1682.206 kb on + strand, within Shew_1459 at 1682.244 kb on - strand, within Shew_1459 at 1683.194 kb on + strand at 1683.301 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,681,129 + Shew_1458 0.54 +0.5 1,681,129 + Shew_1458 0.54 -0.1 1,681,263 + Shew_1458 0.65 +0.1 1,681,357 - Shew_1458 0.73 +0.2 1,681,614 + +0.1 1,681,847 - +0.3 1,681,958 - +0.0 1,682,206 + Shew_1459 0.29 -0.5 1,682,244 - Shew_1459 0.39 -0.1 1,683,194 + +0.0 1,683,301 + -0.2
Or see this region's nucleotide sequence