Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phhA and phhB are separated by 46 nucleotides phhB and Shew_1437 are separated by 233 nucleotides Shew_1437 and Shew_1438 are separated by 246 nucleotides
Shew_1435: phhA - phenylalanine 4-monooxygenase (RefSeq), at 1,649,972 to 1,650,805
phhA
Shew_1436: phhB - pterin-4-alpha-carbinolamine dehydratase (RefSeq), at 1,650,852 to 1,651,190
phhB
Shew_1437: Shew_1437 - transcriptional regulator, TyrR (RefSeq), at 1,651,424 to 1,652,968
_1437
Shew_1438: Shew_1438 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 1,653,215 to 1,654,201
_1438
Position (kb)
1651
1652
1653 Strain fitness (log2 ratio)
-1
0
1 at 1650.898 kb on + strand, within phhB at 1651.142 kb on - strand, within phhB at 1651.505 kb on - strand at 1652.098 kb on - strand, within Shew_1437 at 1652.700 kb on + strand, within Shew_1437 at 1652.708 kb on + strand, within Shew_1437 at 1652.853 kb on - strand at 1653.127 kb on + strand at 1653.182 kb on - strand at 1653.182 kb on - strand at 1653.280 kb on + strand at 1653.736 kb on + strand, within Shew_1438
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,650,898 + phhB Shew_1436 0.14 -0.3 1,651,142 - phhB Shew_1436 0.86 -0.3 1,651,505 - +0.5 1,652,098 - Shew_1437 0.44 +1.0 1,652,700 + Shew_1437 0.83 +0.8 1,652,708 + Shew_1437 0.83 +0.8 1,652,853 - +0.4 1,653,127 + +0.2 1,653,182 - +0.8 1,653,182 - +1.5 1,653,280 + +0.6 1,653,736 + Shew_1438 0.53 +0.6
Or see this region's nucleotide sequence