Strain Fitness in Shewanella loihica PV-4 around Shew_1177

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1176 and Shew_1177 are separated by 324 nucleotidesShew_1177 and Shew_1178 overlap by 1 nucleotides Shew_1176: Shew_1176 - SecC motif-containing protein (RefSeq), at 1,359,863 to 1,360,942 _1176 Shew_1177: Shew_1177 - RND family efflux transporter MFP subunit (RefSeq), at 1,361,267 to 1,362,520 _1177 Shew_1178: Shew_1178 - acriflavin resistance protein (RefSeq), at 1,362,520 to 1,365,648 _1178 Position (kb) 1361 1362 1363Strain fitness (log2 ratio) -2 -1 0 1at 1360.368 kb on + strand, within Shew_1176at 1360.662 kb on - strand, within Shew_1176at 1361.508 kb on - strand, within Shew_1177at 1361.741 kb on - strand, within Shew_1177at 1361.837 kb on + strand, within Shew_1177at 1361.934 kb on + strand, within Shew_1177at 1362.014 kb on - strand, within Shew_1177at 1362.446 kb on - strandat 1362.514 kb on + strandat 1362.613 kb on - strandat 1362.644 kb on + strandat 1362.722 kb on + strandat 1363.335 kb on + strand, within Shew_1178

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,360,368 + Shew_1176 0.47 -0.2
1,360,662 - Shew_1176 0.74 +0.3
1,361,508 - Shew_1177 0.19 -0.0
1,361,741 - Shew_1177 0.38 -0.4
1,361,837 + Shew_1177 0.45 -0.5
1,361,934 + Shew_1177 0.53 -2.1
1,362,014 - Shew_1177 0.60 -0.1
1,362,446 - +0.1
1,362,514 + +0.2
1,362,613 - -0.0
1,362,644 + -0.1
1,362,722 + +0.2
1,363,335 + Shew_1178 0.26 +0.1

Or see this region's nucleotide sequence