Strain Fitness in Shewanella loihica PV-4 around Shew_1163

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1162 and Shew_1163 are separated by 466 nucleotidesShew_1163 and Shew_1164 are separated by 12 nucleotides Shew_1162: Shew_1162 - hypothetical protein (RefSeq), at 1,335,899 to 1,336,273 _1162 Shew_1163: Shew_1163 - RND family efflux transporter MFP subunit (RefSeq), at 1,336,740 to 1,337,897 _1163 Shew_1164: Shew_1164 - hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq), at 1,337,910 to 1,341,032 _1164 Position (kb) 1336 1337 1338Strain fitness (log2 ratio) -1 0 1at 1335.952 kb on - strand, within Shew_1162at 1335.970 kb on - strand, within Shew_1162at 1336.391 kb on - strandat 1336.419 kb on + strandat 1337.075 kb on + strand, within Shew_1163at 1337.744 kb on + strand, within Shew_1163at 1338.124 kb on - strandat 1338.149 kb on + strandat 1338.555 kb on - strand, within Shew_1164at 1338.685 kb on + strand, within Shew_1164at 1338.819 kb on - strand, within Shew_1164

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,335,952 - Shew_1162 0.14 -0.1
1,335,970 - Shew_1162 0.19 -0.1
1,336,391 - -0.0
1,336,419 + +0.0
1,337,075 + Shew_1163 0.29 +0.1
1,337,744 + Shew_1163 0.87 -0.8
1,338,124 - +0.3
1,338,149 + +0.0
1,338,555 - Shew_1164 0.21 +0.2
1,338,685 + Shew_1164 0.25 +0.4
1,338,819 - Shew_1164 0.29 +0.2

Or see this region's nucleotide sequence