Strain Fitness in Shewanella loihica PV-4 around Shew_0804

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0803 and Shew_0804 overlap by 4 nucleotidesShew_0804 and Shew_0805 overlap by 4 nucleotidesShew_0805 and Shew_0806 overlap by 11 nucleotides Shew_0803: Shew_0803 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 916,063 to 917,301 _0803 Shew_0804: Shew_0804 - two component transcriptional regulator (RefSeq), at 917,298 to 918,002 _0804 Shew_0805: Shew_0805 - hypothetical protein (RefSeq), at 917,999 to 918,394 _0805 Shew_0806: Shew_0806 - MltA-interacting MipA family protein (RefSeq), at 918,384 to 919,229 _0806 Position (kb) 917 918 919Strain fitness (log2 ratio) -1 0 1at 916.373 kb on + strand, within Shew_0803at 916.401 kb on + strand, within Shew_0803at 916.742 kb on + strand, within Shew_0803at 916.896 kb on - strand, within Shew_0803at 916.896 kb on - strand, within Shew_0803at 916.948 kb on + strand, within Shew_0803at 917.049 kb on + strand, within Shew_0803at 917.057 kb on - strand, within Shew_0803at 917.149 kb on - strand, within Shew_0803at 917.195 kb on + strandat 917.463 kb on - strand, within Shew_0804at 917.678 kb on + strand, within Shew_0804at 917.720 kb on + strand, within Shew_0804at 917.728 kb on - strand, within Shew_0804at 917.810 kb on + strand, within Shew_0804at 917.930 kb on + strand, within Shew_0804at 918.201 kb on - strand, within Shew_0805at 918.308 kb on - strand, within Shew_0805at 918.367 kb on + strandat 918.835 kb on - strand, within Shew_0806at 918.985 kb on + strand, within Shew_0806

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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916,373 + Shew_0803 0.25 -0.0
916,401 + Shew_0803 0.27 +0.1
916,742 + Shew_0803 0.55 +0.4
916,896 - Shew_0803 0.67 +0.2
916,896 - Shew_0803 0.67 +0.3
916,948 + Shew_0803 0.71 +0.6
917,049 + Shew_0803 0.80 +0.5
917,057 - Shew_0803 0.80 -0.0
917,149 - Shew_0803 0.88 +0.1
917,195 + -0.6
917,463 - Shew_0804 0.23 +0.7
917,678 + Shew_0804 0.54 -0.7
917,720 + Shew_0804 0.60 -1.0
917,728 - Shew_0804 0.61 -0.3
917,810 + Shew_0804 0.73 +0.1
917,930 + Shew_0804 0.90 -0.7
918,201 - Shew_0805 0.51 -0.2
918,308 - Shew_0805 0.78 -0.2
918,367 + -0.2
918,835 - Shew_0806 0.53 +0.1
918,985 + Shew_0806 0.71 +1.1

Or see this region's nucleotide sequence