Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobT and Shew_0715 are separated by 41 nucleotides Shew_0715 and Shew_0716 overlap by 4 nucleotides Shew_0716 and Shew_0717 are separated by 12 nucleotides
Shew_0714: cobT - nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (RefSeq), at 814,495 to 815,523
cobT
Shew_0715: Shew_0715 - cobalamin 5'-phosphate synthase (RefSeq), at 815,565 to 816,332
_0715
Shew_0716: Shew_0716 - cobalbumin biosynthesis enzyme (RefSeq), at 816,329 to 816,877
_0716
Shew_0717: Shew_0717 - cobyric acid synthase (RefSeq), at 816,890 to 818,494
_0717
Position (kb) 816
817 Strain fitness (log2 ratio) -1
0
1 at 815.578 kb on + strand at 815.720 kb on + strand, within Shew_0715 at 815.728 kb on - strand, within Shew_0715 at 815.944 kb on - strand, within Shew_0715 at 816.002 kb on - strand, within Shew_0715 at 816.079 kb on - strand, within Shew_0715 at 816.304 kb on - strand at 816.411 kb on + strand, within Shew_0716 at 816.485 kb on + strand, within Shew_0716 at 816.518 kb on + strand, within Shew_0716 at 816.526 kb on - strand, within Shew_0716 at 816.849 kb on - strand at 817.159 kb on + strand, within Shew_0717 at 817.206 kb on - strand, within Shew_0717 at 817.248 kb on - strand, within Shew_0717 at 817.512 kb on + strand, within Shew_0717 at 817.540 kb on + strand, within Shew_0717 at 817.581 kb on + strand, within Shew_0717 at 817.599 kb on - strand, within Shew_0717 at 817.623 kb on + strand, within Shew_0717
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 815,578 + -0.8 815,720 + Shew_0715 0.20 +0.3 815,728 - Shew_0715 0.21 +0.4 815,944 - Shew_0715 0.49 +0.1 816,002 - Shew_0715 0.57 -0.3 816,079 - Shew_0715 0.67 +0.3 816,304 - -0.1 816,411 + Shew_0716 0.15 -0.6 816,485 + Shew_0716 0.28 -0.2 816,518 + Shew_0716 0.34 -0.0 816,526 - Shew_0716 0.36 -0.2 816,849 - +0.5 817,159 + Shew_0717 0.17 +0.1 817,206 - Shew_0717 0.20 -0.0 817,248 - Shew_0717 0.22 -0.3 817,512 + Shew_0717 0.39 -0.2 817,540 + Shew_0717 0.40 +0.2 817,581 + Shew_0717 0.43 +0.1 817,599 - Shew_0717 0.44 +0.3 817,623 + Shew_0717 0.46 -0.3
Or see this region's nucleotide sequence