Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0625 and Shew_0626 are separated by 13 nucleotides Shew_0626 and Shew_0627 are separated by 11 nucleotides Shew_0627 and Shew_0628 are separated by 265 nucleotides
Shew_0625: Shew_0625 - spermidine synthase (RefSeq), at 709,149 to 710,876
_0625
Shew_0626: Shew_0626 - hypothetical protein (RefSeq), at 710,890 to 711,789
_0626
Shew_0627: Shew_0627 - hypothetical protein (RefSeq), at 711,801 to 712,757
_0627
Shew_0628: Shew_0628 - (glutamate--ammonia-ligase) adenylyltransferase (RefSeq), at 713,023 to 715,893
_0628
Position (kb) 711
712
713 Strain fitness (log2 ratio) -1
0
1 at 710.880 kb on + strand at 710.991 kb on + strand, within Shew_0626 at 711.036 kb on + strand, within Shew_0626 at 711.835 kb on - strand at 711.902 kb on + strand, within Shew_0627 at 711.902 kb on + strand, within Shew_0627 at 712.196 kb on - strand, within Shew_0627 at 712.231 kb on + strand, within Shew_0627 at 712.636 kb on - strand, within Shew_0627 at 712.636 kb on - strand, within Shew_0627 at 712.636 kb on - strand, within Shew_0627 at 712.642 kb on + strand, within Shew_0627 at 712.642 kb on + strand, within Shew_0627 at 712.642 kb on + strand, within Shew_0627 at 712.650 kb on - strand, within Shew_0627 at 712.776 kb on + strand at 713.310 kb on + strand, within Shew_0628 at 713.318 kb on - strand, within Shew_0628 at 713.318 kb on - strand, within Shew_0628 at 713.478 kb on + strand, within Shew_0628 at 713.488 kb on + strand, within Shew_0628
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 710,880 + +0.6 710,991 + Shew_0626 0.11 +0.6 711,036 + Shew_0626 0.16 +0.7 711,835 - +0.6 711,902 + Shew_0627 0.11 +0.6 711,902 + Shew_0627 0.11 +0.7 712,196 - Shew_0627 0.41 +0.5 712,231 + Shew_0627 0.45 +0.4 712,636 - Shew_0627 0.87 +0.6 712,636 - Shew_0627 0.87 +1.4 712,636 - Shew_0627 0.87 +0.4 712,642 + Shew_0627 0.88 +1.4 712,642 + Shew_0627 0.88 +0.6 712,642 + Shew_0627 0.88 +1.5 712,650 - Shew_0627 0.89 +0.7 712,776 + +0.5 713,310 + Shew_0628 0.10 +0.0 713,318 - Shew_0628 0.10 -0.2 713,318 - Shew_0628 0.10 +0.8 713,478 + Shew_0628 0.16 +0.6 713,488 + Shew_0628 0.16 +0.3
Or see this region's nucleotide sequence