Strain Fitness in Shewanella loihica PV-4 around Shew_0626

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0625 and Shew_0626 are separated by 13 nucleotidesShew_0626 and Shew_0627 are separated by 11 nucleotides Shew_0625: Shew_0625 - spermidine synthase (RefSeq), at 709,149 to 710,876 _0625 Shew_0626: Shew_0626 - hypothetical protein (RefSeq), at 710,890 to 711,789 _0626 Shew_0627: Shew_0627 - hypothetical protein (RefSeq), at 711,801 to 712,757 _0627 Position (kb) 710 711 712Strain fitness (log2 ratio) -1 0 1at 710.222 kb on + strand, within Shew_0625at 710.222 kb on + strand, within Shew_0625at 710.543 kb on + strand, within Shew_0625at 710.880 kb on + strandat 710.991 kb on + strand, within Shew_0626at 711.036 kb on + strand, within Shew_0626at 711.835 kb on - strandat 711.902 kb on + strand, within Shew_0627at 711.902 kb on + strand, within Shew_0627at 712.196 kb on - strand, within Shew_0627at 712.231 kb on + strand, within Shew_0627at 712.636 kb on - strand, within Shew_0627at 712.636 kb on - strand, within Shew_0627at 712.636 kb on - strand, within Shew_0627at 712.642 kb on + strand, within Shew_0627at 712.642 kb on + strand, within Shew_0627at 712.642 kb on + strand, within Shew_0627at 712.650 kb on - strand, within Shew_0627at 712.776 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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710,222 + Shew_0625 0.62 +0.4
710,222 + Shew_0625 0.62 +0.8
710,543 + Shew_0625 0.81 +0.8
710,880 + +0.6
710,991 + Shew_0626 0.11 +0.6
711,036 + Shew_0626 0.16 +0.7
711,835 - +0.6
711,902 + Shew_0627 0.11 +0.6
711,902 + Shew_0627 0.11 +0.7
712,196 - Shew_0627 0.41 +0.5
712,231 + Shew_0627 0.45 +0.4
712,636 - Shew_0627 0.87 +0.6
712,636 - Shew_0627 0.87 +1.4
712,636 - Shew_0627 0.87 +0.4
712,642 + Shew_0627 0.88 +1.4
712,642 + Shew_0627 0.88 +0.6
712,642 + Shew_0627 0.88 +1.5
712,650 - Shew_0627 0.89 +0.7
712,776 + +0.5

Or see this region's nucleotide sequence