Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0274 and Shew_0275 are separated by 41 nucleotides Shew_0275 and Shew_0276 are separated by 5 nucleotides
Shew_0274: Shew_0274 - hypothetical protein (RefSeq), at 291,207 to 292,340
_0274
Shew_0275: Shew_0275 - tetraheme cytochrome c, putative (RefSeq), at 292,382 to 292,750
_0275
Shew_0276: Shew_0276 - flavocytochrome c (RefSeq), at 292,756 to 294,273
_0276
Position (kb) 292
293 Strain fitness (log2 ratio) -1
0
1
2
3 at 291.440 kb on + strand, within Shew_0274 at 291.511 kb on + strand, within Shew_0274 at 291.530 kb on + strand, within Shew_0274 at 291.633 kb on + strand, within Shew_0274 at 291.701 kb on - strand, within Shew_0274 at 291.748 kb on - strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.873 kb on + strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274 at 291.881 kb on - strand, within Shew_0274 at 292.429 kb on - strand, within Shew_0275 at 292.711 kb on + strand, within Shew_0275 at 292.762 kb on - strand at 292.762 kb on - strand at 292.877 kb on + strand at 292.973 kb on - strand, within Shew_0276 at 292.973 kb on - strand, within Shew_0276 at 293.222 kb on + strand, within Shew_0276 at 293.276 kb on + strand, within Shew_0276 at 293.396 kb on - strand, within Shew_0276 at 293.525 kb on - strand, within Shew_0276 at 293.530 kb on - strand, within Shew_0276 at 293.604 kb on - strand, within Shew_0276 at 293.604 kb on - strand, within Shew_0276 at 293.649 kb on + strand, within Shew_0276 at 293.649 kb on + strand, within Shew_0276 at 293.657 kb on - strand, within Shew_0276 at 293.664 kb on + strand, within Shew_0276 at 293.745 kb on + strand, within Shew_0276
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 291,440 + Shew_0274 0.21 +0.2 291,511 + Shew_0274 0.27 -0.0 291,530 + Shew_0274 0.28 +0.1 291,633 + Shew_0274 0.38 +0.0 291,701 - Shew_0274 0.44 +2.6 291,748 - Shew_0274 0.48 +0.3 291,873 + Shew_0274 0.59 +0.6 291,873 + Shew_0274 0.59 +0.1 291,873 + Shew_0274 0.59 -0.0 291,881 - Shew_0274 0.59 +0.2 291,881 - Shew_0274 0.59 -0.0 292,429 - Shew_0275 0.13 -0.0 292,711 + Shew_0275 0.89 -1.0 292,762 - +0.0 292,762 - -0.5 292,877 + -0.1 292,973 - Shew_0276 0.14 +0.2 292,973 - Shew_0276 0.14 +0.0 293,222 + Shew_0276 0.31 +0.2 293,276 + Shew_0276 0.34 +0.3 293,396 - Shew_0276 0.42 +0.2 293,525 - Shew_0276 0.51 +0.0 293,530 - Shew_0276 0.51 +0.0 293,604 - Shew_0276 0.56 -0.3 293,604 - Shew_0276 0.56 -0.1 293,649 + Shew_0276 0.59 +0.1 293,649 + Shew_0276 0.59 +0.4 293,657 - Shew_0276 0.59 +2.8 293,664 + Shew_0276 0.60 +0.4 293,745 + Shew_0276 0.65 +0.2
Or see this region's nucleotide sequence