Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4171

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4170 and Dshi_4171 overlap by 1 nucleotidesDshi_4171 and Dshi_4172 are separated by 66 nucleotides Dshi_4170: Dshi_4170 - periplasmic glucan biosynthesis protein (RefSeq), at 18,287 to 19,852 _4170 Dshi_4171: Dshi_4171 - periplasmic glucan biosynthesis protein MdoG (RefSeq), at 19,852 to 21,336 _4171 Dshi_4172: Dshi_4172 - transcriptional regulator, AraC family (RefSeq), at 21,403 to 22,290 _4172 Position (kb) 19 20 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1at 18.885 kb on - strand, within Dshi_4170at 19.001 kb on + strand, within Dshi_4170at 19.001 kb on + strand, within Dshi_4170at 19.379 kb on + strand, within Dshi_4170at 19.439 kb on - strand, within Dshi_4170at 19.494 kb on + strand, within Dshi_4170at 20.185 kb on - strand, within Dshi_4171at 20.787 kb on + strand, within Dshi_4171at 21.029 kb on + strand, within Dshi_4171at 21.084 kb on + strand, within Dshi_4171at 21.125 kb on + strand, within Dshi_4171at 21.184 kb on - strand, within Dshi_4171at 21.316 kb on - strandat 21.316 kb on - strandat 21.481 kb on + strandat 21.511 kb on + strand, within Dshi_4172at 21.678 kb on - strand, within Dshi_4172at 21.689 kb on + strandat 22.119 kb on - strand, within Dshi_4172at 22.329 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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18,885 - Dshi_4170 0.38 -0.8
19,001 + Dshi_4170 0.46 +0.7
19,001 + Dshi_4170 0.46 +1.2
19,379 + Dshi_4170 0.70 +0.3
19,439 - Dshi_4170 0.74 -0.2
19,494 + Dshi_4170 0.77 -0.4
20,185 - Dshi_4171 0.22 +0.0
20,787 + Dshi_4171 0.63 -2.8
21,029 + Dshi_4171 0.79 -3.3
21,084 + Dshi_4171 0.83 -0.4
21,125 + Dshi_4171 0.86 -1.0
21,184 - Dshi_4171 0.90 -0.5
21,316 - -1.7
21,316 - -0.6
21,481 + +0.4
21,511 + Dshi_4172 0.12 -0.7
21,678 - Dshi_4172 0.31 +1.1
21,689 + +0.8
22,119 - Dshi_4172 0.81 -2.5
22,329 + +0.6

Or see this region's nucleotide sequence