Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3971

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3968 and Dshi_3969 are separated by 160 nucleotidesDshi_3969 and Dshi_3970 are separated by 167 nucleotidesDshi_3970 and Dshi_3971 are separated by 124 nucleotidesDshi_3971 and Dshi_3972 are separated by 143 nucleotidesDshi_3972 and Dshi_3973 are separated by 43 nucleotides Dshi_3968: Dshi_3968 - cation efflux protein (RefSeq), at 30,885 to 31,736 _3968 Dshi_3969: Dshi_3969 - hypothetical protein (RefSeq), at 31,897 to 32,124 _3969 Dshi_3970: Dshi_3970 - transcriptional regulator, XRE family (RefSeq), at 32,292 to 32,549 _3970 Dshi_3971: Dshi_3971 - hypothetical protein (RefSeq), at 32,674 to 32,994 _3971 Dshi_3972: Dshi_3972 - hypothetical protein (RefSeq), at 33,138 to 33,491 _3972 Dshi_3973: Dshi_3973 - Lytic transglycosylase catalytic (RefSeq), at 33,535 to 34,149 _3973 Position (kb) 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 31.721 kb on + strandat 31.721 kb on + strandat 31.745 kb on - strandat 31.888 kb on - strandat 31.921 kb on - strand, within Dshi_3969at 31.992 kb on + strand, within Dshi_3969at 31.997 kb on + strand, within Dshi_3969at 32.000 kb on - strand, within Dshi_3969at 32.015 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.017 kb on - strand, within Dshi_3969at 32.033 kb on - strand, within Dshi_3969at 32.068 kb on - strand, within Dshi_3969at 32.070 kb on + strand, within Dshi_3969at 32.078 kb on - strand, within Dshi_3969at 32.084 kb on + strand, within Dshi_3969at 32.089 kb on + strand, within Dshi_3969at 32.102 kb on + strandat 32.108 kb on + strandat 32.116 kb on - strandat 32.135 kb on + strandat 32.162 kb on - strandat 32.185 kb on - strandat 32.192 kb on + strandat 32.242 kb on + strandat 32.242 kb on + strandat 32.261 kb on - strandat 32.310 kb on + strandat 32.318 kb on - strand, within Dshi_3970at 32.318 kb on - strand, within Dshi_3970at 32.318 kb on - strand, within Dshi_3970at 32.318 kb on - strand, within Dshi_3970at 32.364 kb on - strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.367 kb on + strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.375 kb on - strand, within Dshi_3970at 32.382 kb on - strand, within Dshi_3970at 32.382 kb on - strand, within Dshi_3970at 32.433 kb on - strand, within Dshi_3970at 32.469 kb on + strand, within Dshi_3970at 32.469 kb on + strand, within Dshi_3970at 32.476 kb on - strand, within Dshi_3970at 32.486 kb on + strand, within Dshi_3970at 32.489 kb on - strand, within Dshi_3970at 32.489 kb on - strand, within Dshi_3970at 32.642 kb on + strandat 32.644 kb on + strandat 32.652 kb on - strandat 32.652 kb on - strandat 32.652 kb on - strandat 32.664 kb on - strandat 32.686 kb on - strandat 32.730 kb on + strand, within Dshi_3971at 32.730 kb on + strand, within Dshi_3971at 32.738 kb on - strand, within Dshi_3971at 32.749 kb on + strand, within Dshi_3971at 32.762 kb on - strand, within Dshi_3971at 32.762 kb on - strand, within Dshi_3971at 32.762 kb on - strand, within Dshi_3971at 32.789 kb on + strand, within Dshi_3971at 32.861 kb on + strand, within Dshi_3971at 32.876 kb on + strand, within Dshi_3971at 32.886 kb on + strand, within Dshi_3971at 32.899 kb on - strand, within Dshi_3971at 32.944 kb on - strand, within Dshi_3971at 32.953 kb on - strand, within Dshi_3971at 32.953 kb on - strand, within Dshi_3971at 33.001 kb on + strandat 33.009 kb on - strandat 33.016 kb on - strandat 33.016 kb on - strandat 33.098 kb on + strandat 33.105 kb on + strandat 33.114 kb on + strandat 33.143 kb on - strandat 33.214 kb on + strand, within Dshi_3972at 33.249 kb on + strand, within Dshi_3972at 33.266 kb on + strand, within Dshi_3972at 33.273 kb on - strand, within Dshi_3972at 33.384 kb on + strand, within Dshi_3972at 33.388 kb on + strand, within Dshi_3972at 33.388 kb on + strand, within Dshi_3972at 33.414 kb on - strand, within Dshi_3972at 33.441 kb on - strand, within Dshi_3972at 33.476 kb on + strandat 33.481 kb on + strandat 33.484 kb on - strandat 33.499 kb on - strandat 33.538 kb on + strandat 33.543 kb on + strandat 33.563 kb on + strandat 33.563 kb on + strandat 33.563 kb on + strandat 33.581 kb on - strandat 33.614 kb on + strand, within Dshi_3973at 33.614 kb on + strand, within Dshi_3973at 33.619 kb on + strand, within Dshi_3973at 33.619 kb on + strand, within Dshi_3973at 33.627 kb on - strand, within Dshi_3973at 33.627 kb on - strand, within Dshi_3973at 33.632 kb on - strand, within Dshi_3973at 33.662 kb on - strand, within Dshi_3973at 33.712 kb on + strand, within Dshi_3973at 33.712 kb on + strand, within Dshi_3973at 33.720 kb on - strand, within Dshi_3973at 33.720 kb on - strand, within Dshi_3973at 33.720 kb on - strand, within Dshi_3973at 33.766 kb on + strand, within Dshi_3973at 33.773 kb on + strand, within Dshi_3973at 33.778 kb on + strand, within Dshi_3973at 33.778 kb on + strand, within Dshi_3973at 33.778 kb on + strand, within Dshi_3973at 33.786 kb on - strand, within Dshi_3973at 33.786 kb on - strand, within Dshi_3973at 33.786 kb on - strand, within Dshi_3973at 33.822 kb on + strand, within Dshi_3973at 33.870 kb on + strand, within Dshi_3973at 33.892 kb on - strand, within Dshi_3973at 33.957 kb on - strand, within Dshi_3973

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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31,721 + -1.2
31,721 + +0.1
31,745 - +0.4
31,888 - -1.8
31,921 - Dshi_3969 0.11 +0.6
31,992 + Dshi_3969 0.42 +1.8
31,997 + Dshi_3969 0.44 -0.2
32,000 - Dshi_3969 0.45 -0.2
32,015 - Dshi_3969 0.52 +0.6
32,017 - Dshi_3969 0.53 -0.2
32,017 - Dshi_3969 0.53 +1.8
32,017 - Dshi_3969 0.53 +1.2
32,017 - Dshi_3969 0.53 +0.5
32,017 - Dshi_3969 0.53 +0.4
32,017 - Dshi_3969 0.53 +0.9
32,033 - Dshi_3969 0.60 +0.8
32,068 - Dshi_3969 0.75 -3.0
32,070 + Dshi_3969 0.76 +1.4
32,078 - Dshi_3969 0.79 +1.4
32,084 + Dshi_3969 0.82 +0.3
32,089 + Dshi_3969 0.84 +0.0
32,102 + -0.2
32,108 + -0.2
32,116 - +0.9
32,135 + +1.8
32,162 - -0.6
32,185 - +0.3
32,192 + -0.6
32,242 + -0.6
32,242 + -0.2
32,261 - +0.0
32,310 + +0.9
32,318 - Dshi_3970 0.10 -0.2
32,318 - Dshi_3970 0.10 +0.1
32,318 - Dshi_3970 0.10 -1.1
32,318 - Dshi_3970 0.10 +0.7
32,364 - Dshi_3970 0.28 +0.4
32,367 + Dshi_3970 0.29 +0.1
32,367 + Dshi_3970 0.29 +0.8
32,367 + Dshi_3970 0.29 +1.4
32,367 + Dshi_3970 0.29 -1.2
32,367 + Dshi_3970 0.29 +0.9
32,367 + Dshi_3970 0.29 -0.4
32,367 + Dshi_3970 0.29 -0.5
32,375 - Dshi_3970 0.32 +0.1
32,375 - Dshi_3970 0.32 +0.5
32,375 - Dshi_3970 0.32 -0.7
32,375 - Dshi_3970 0.32 -0.1
32,375 - Dshi_3970 0.32 +0.9
32,375 - Dshi_3970 0.32 -0.3
32,375 - Dshi_3970 0.32 -0.3
32,382 - Dshi_3970 0.35 +1.4
32,382 - Dshi_3970 0.35 +0.8
32,433 - Dshi_3970 0.55 -0.2
32,469 + Dshi_3970 0.69 -0.6
32,469 + Dshi_3970 0.69 -0.6
32,476 - Dshi_3970 0.71 +0.4
32,486 + Dshi_3970 0.75 -0.2
32,489 - Dshi_3970 0.76 +0.9
32,489 - Dshi_3970 0.76 -2.9
32,642 + +0.6
32,644 + +0.6
32,652 - -0.6
32,652 - +0.1
32,652 - -1.7
32,664 - -0.4
32,686 - -0.2
32,730 + Dshi_3971 0.17 -0.1
32,730 + Dshi_3971 0.17 -1.0
32,738 - Dshi_3971 0.20 -0.1
32,749 + Dshi_3971 0.23 -0.2
32,762 - Dshi_3971 0.27 +0.3
32,762 - Dshi_3971 0.27 +0.6
32,762 - Dshi_3971 0.27 -1.2
32,789 + Dshi_3971 0.36 -0.9
32,861 + Dshi_3971 0.58 +1.0
32,876 + Dshi_3971 0.63 -0.1
32,886 + Dshi_3971 0.66 +0.2
32,899 - Dshi_3971 0.70 +1.3
32,944 - Dshi_3971 0.84 +0.1
32,953 - Dshi_3971 0.87 +0.0
32,953 - Dshi_3971 0.87 -0.1
33,001 + +0.8
33,009 - +0.5
33,016 - -2.8
33,016 - -0.4
33,098 + -2.8
33,105 + -0.7
33,114 + -1.8
33,143 - -0.2
33,214 + Dshi_3972 0.21 -2.5
33,249 + Dshi_3972 0.31 -1.9
33,266 + Dshi_3972 0.36 -1.6
33,273 - Dshi_3972 0.38 -0.2
33,384 + Dshi_3972 0.69 -3.1
33,388 + Dshi_3972 0.71 -1.1
33,388 + Dshi_3972 0.71 -2.0
33,414 - Dshi_3972 0.78 -0.7
33,441 - Dshi_3972 0.86 -3.4
33,476 + -1.0
33,481 + -1.5
33,484 - -1.2
33,499 - -0.7
33,538 + -1.0
33,543 + -0.8
33,563 + -1.1
33,563 + -0.7
33,563 + -0.0
33,581 - -0.5
33,614 + Dshi_3973 0.13 +0.0
33,614 + Dshi_3973 0.13 -0.0
33,619 + Dshi_3973 0.14 -0.8
33,619 + Dshi_3973 0.14 -0.5
33,627 - Dshi_3973 0.15 +0.4
33,627 - Dshi_3973 0.15 +0.8
33,632 - Dshi_3973 0.16 +0.0
33,662 - Dshi_3973 0.21 -1.0
33,712 + Dshi_3973 0.29 -0.2
33,712 + Dshi_3973 0.29 +0.8
33,720 - Dshi_3973 0.30 -0.6
33,720 - Dshi_3973 0.30 -0.1
33,720 - Dshi_3973 0.30 -0.5
33,766 + Dshi_3973 0.38 -0.0
33,773 + Dshi_3973 0.39 +0.9
33,778 + Dshi_3973 0.40 -1.5
33,778 + Dshi_3973 0.40 -1.1
33,778 + Dshi_3973 0.40 +0.5
33,786 - Dshi_3973 0.41 +0.2
33,786 - Dshi_3973 0.41 -0.8
33,786 - Dshi_3973 0.41 +0.2
33,822 + Dshi_3973 0.47 +0.2
33,870 + Dshi_3973 0.54 +0.2
33,892 - Dshi_3973 0.58 -0.2
33,957 - Dshi_3973 0.69 +0.3

Or see this region's nucleotide sequence