Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3519 and Dshi_3520 are separated by 18 nucleotides Dshi_3520 and Dshi_3521 are separated by 123 nucleotides Dshi_3521 and Dshi_3522 are separated by 13 nucleotides Dshi_3522 and Dshi_3523 are separated by 148 nucleotides
Dshi_3519: Dshi_3519 - chlorophyllide reductase subunit Z (RefSeq), at 3,699,577 to 3,701,043
_3519
Dshi_3520: Dshi_3520 - PufQ cytochrome subunit (RefSeq), at 3,701,062 to 3,701,286
_3520
Dshi_3521: Dshi_3521 - antenna complex, alpha/beta subunit (RefSeq), at 3,701,410 to 3,701,559
_3521
Dshi_3522: Dshi_3522 - antenna complex alpha/beta subunit (RefSeq), at 3,701,573 to 3,701,734
_3522
Dshi_3523: Dshi_3523 - photosynthetic reaction center L subunit (RefSeq), at 3,701,883 to 3,702,722
_3523
Position (kb)
3701
3702 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3700.501 kb on - strand, within Dshi_3519 at 3700.503 kb on + strand, within Dshi_3519 at 3700.615 kb on + strand, within Dshi_3519 at 3700.617 kb on + strand, within Dshi_3519 at 3700.747 kb on + strand, within Dshi_3519 at 3700.911 kb on - strand at 3700.912 kb on - strand at 3700.930 kb on + strand at 3700.972 kb on - strand at 3700.976 kb on + strand at 3701.005 kb on - strand at 3701.019 kb on - strand at 3701.102 kb on - strand, within Dshi_3520 at 3701.125 kb on - strand, within Dshi_3520 at 3701.180 kb on + strand, within Dshi_3520 at 3701.180 kb on + strand, within Dshi_3520 at 3701.186 kb on - strand, within Dshi_3520 at 3701.204 kb on - strand, within Dshi_3520 at 3701.279 kb on - strand at 3701.330 kb on + strand at 3701.331 kb on - strand at 3701.350 kb on - strand at 3701.430 kb on + strand, within Dshi_3521 at 3701.430 kb on + strand, within Dshi_3521 at 3701.438 kb on - strand, within Dshi_3521 at 3701.440 kb on + strand, within Dshi_3521 at 3701.440 kb on + strand, within Dshi_3521 at 3701.448 kb on - strand, within Dshi_3521 at 3701.553 kb on + strand at 3701.561 kb on - strand at 3701.561 kb on - strand at 3701.682 kb on + strand, within Dshi_3522 at 3701.685 kb on - strand, within Dshi_3522 at 3701.685 kb on - strand, within Dshi_3522 at 3701.685 kb on - strand, within Dshi_3522 at 3701.762 kb on + strand at 3701.832 kb on + strand at 3701.887 kb on - strand at 3702.074 kb on + strand, within Dshi_3523 at 3702.093 kb on + strand, within Dshi_3523 at 3702.112 kb on + strand, within Dshi_3523 at 3702.120 kb on + strand, within Dshi_3523 at 3702.125 kb on + strand, within Dshi_3523 at 3702.136 kb on + strand, within Dshi_3523 at 3702.173 kb on - strand, within Dshi_3523 at 3702.244 kb on - strand, within Dshi_3523 at 3702.268 kb on + strand, within Dshi_3523 at 3702.342 kb on + strand, within Dshi_3523 at 3702.350 kb on - strand, within Dshi_3523 at 3702.490 kb on + strand, within Dshi_3523
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 3,700,501 - Dshi_3519 0.63 +0.9 3,700,503 + Dshi_3519 0.63 +0.9 3,700,615 + Dshi_3519 0.71 +1.2 3,700,617 + Dshi_3519 0.71 +0.3 3,700,747 + Dshi_3519 0.80 +1.6 3,700,911 - +2.5 3,700,912 - +0.7 3,700,930 + +0.9 3,700,972 - +0.5 3,700,976 + +1.4 3,701,005 - +1.1 3,701,019 - +2.5 3,701,102 - Dshi_3520 0.18 +1.8 3,701,125 - Dshi_3520 0.28 +0.6 3,701,180 + Dshi_3520 0.52 +3.2 3,701,180 + Dshi_3520 0.52 -0.1 3,701,186 - Dshi_3520 0.55 +1.1 3,701,204 - Dshi_3520 0.63 +1.0 3,701,279 - +1.8 3,701,330 + +0.1 3,701,331 - +2.4 3,701,350 - -2.1 3,701,430 + Dshi_3521 0.13 +1.1 3,701,430 + Dshi_3521 0.13 +2.3 3,701,438 - Dshi_3521 0.19 +2.0 3,701,440 + Dshi_3521 0.20 +3.7 3,701,440 + Dshi_3521 0.20 +1.6 3,701,448 - Dshi_3521 0.25 +0.5 3,701,553 + +1.1 3,701,561 - +1.9 3,701,561 - +1.4 3,701,682 + Dshi_3522 0.67 +1.8 3,701,685 - Dshi_3522 0.69 +2.7 3,701,685 - Dshi_3522 0.69 +1.5 3,701,685 - Dshi_3522 0.69 +0.1 3,701,762 + +0.9 3,701,832 + +1.7 3,701,887 - -0.1 3,702,074 + Dshi_3523 0.23 +1.9 3,702,093 + Dshi_3523 0.25 +2.6 3,702,112 + Dshi_3523 0.27 +2.3 3,702,120 + Dshi_3523 0.28 +2.0 3,702,125 + Dshi_3523 0.29 +2.3 3,702,136 + Dshi_3523 0.30 -2.9 3,702,173 - Dshi_3523 0.35 +0.1 3,702,244 - Dshi_3523 0.43 +1.2 3,702,268 + Dshi_3523 0.46 +2.5 3,702,342 + Dshi_3523 0.55 +2.5 3,702,350 - Dshi_3523 0.56 +2.4 3,702,490 + Dshi_3523 0.72 -0.1
Or see this region's nucleotide sequence