Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3521

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3519 and Dshi_3520 are separated by 18 nucleotidesDshi_3520 and Dshi_3521 are separated by 123 nucleotidesDshi_3521 and Dshi_3522 are separated by 13 nucleotidesDshi_3522 and Dshi_3523 are separated by 148 nucleotides Dshi_3519: Dshi_3519 - chlorophyllide reductase subunit Z (RefSeq), at 3,699,577 to 3,701,043 _3519 Dshi_3520: Dshi_3520 - PufQ cytochrome subunit (RefSeq), at 3,701,062 to 3,701,286 _3520 Dshi_3521: Dshi_3521 - antenna complex, alpha/beta subunit (RefSeq), at 3,701,410 to 3,701,559 _3521 Dshi_3522: Dshi_3522 - antenna complex alpha/beta subunit (RefSeq), at 3,701,573 to 3,701,734 _3522 Dshi_3523: Dshi_3523 - photosynthetic reaction center L subunit (RefSeq), at 3,701,883 to 3,702,722 _3523 Position (kb) 3701 3702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3700.501 kb on - strand, within Dshi_3519at 3700.503 kb on + strand, within Dshi_3519at 3700.615 kb on + strand, within Dshi_3519at 3700.617 kb on + strand, within Dshi_3519at 3700.747 kb on + strand, within Dshi_3519at 3700.911 kb on - strandat 3700.912 kb on - strandat 3700.930 kb on + strandat 3700.972 kb on - strandat 3700.976 kb on + strandat 3701.005 kb on - strandat 3701.019 kb on - strandat 3701.102 kb on - strand, within Dshi_3520at 3701.125 kb on - strand, within Dshi_3520at 3701.180 kb on + strand, within Dshi_3520at 3701.180 kb on + strand, within Dshi_3520at 3701.186 kb on - strand, within Dshi_3520at 3701.204 kb on - strand, within Dshi_3520at 3701.279 kb on - strandat 3701.330 kb on + strandat 3701.331 kb on - strandat 3701.350 kb on - strandat 3701.430 kb on + strand, within Dshi_3521at 3701.430 kb on + strand, within Dshi_3521at 3701.438 kb on - strand, within Dshi_3521at 3701.440 kb on + strand, within Dshi_3521at 3701.440 kb on + strand, within Dshi_3521at 3701.448 kb on - strand, within Dshi_3521at 3701.553 kb on + strandat 3701.561 kb on - strandat 3701.561 kb on - strandat 3701.682 kb on + strand, within Dshi_3522at 3701.685 kb on - strand, within Dshi_3522at 3701.685 kb on - strand, within Dshi_3522at 3701.685 kb on - strand, within Dshi_3522at 3701.762 kb on + strandat 3701.832 kb on + strandat 3701.887 kb on - strandat 3702.074 kb on + strand, within Dshi_3523at 3702.093 kb on + strand, within Dshi_3523at 3702.112 kb on + strand, within Dshi_3523at 3702.120 kb on + strand, within Dshi_3523at 3702.125 kb on + strand, within Dshi_3523at 3702.136 kb on + strand, within Dshi_3523at 3702.173 kb on - strand, within Dshi_3523at 3702.244 kb on - strand, within Dshi_3523at 3702.268 kb on + strand, within Dshi_3523at 3702.342 kb on + strand, within Dshi_3523at 3702.350 kb on - strand, within Dshi_3523at 3702.490 kb on + strand, within Dshi_3523

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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3,700,501 - Dshi_3519 0.63 +0.9
3,700,503 + Dshi_3519 0.63 +0.9
3,700,615 + Dshi_3519 0.71 +1.2
3,700,617 + Dshi_3519 0.71 +0.3
3,700,747 + Dshi_3519 0.80 +1.6
3,700,911 - +2.5
3,700,912 - +0.7
3,700,930 + +0.9
3,700,972 - +0.5
3,700,976 + +1.4
3,701,005 - +1.1
3,701,019 - +2.5
3,701,102 - Dshi_3520 0.18 +1.8
3,701,125 - Dshi_3520 0.28 +0.6
3,701,180 + Dshi_3520 0.52 +3.2
3,701,180 + Dshi_3520 0.52 -0.1
3,701,186 - Dshi_3520 0.55 +1.1
3,701,204 - Dshi_3520 0.63 +1.0
3,701,279 - +1.8
3,701,330 + +0.1
3,701,331 - +2.4
3,701,350 - -2.1
3,701,430 + Dshi_3521 0.13 +1.1
3,701,430 + Dshi_3521 0.13 +2.3
3,701,438 - Dshi_3521 0.19 +2.0
3,701,440 + Dshi_3521 0.20 +3.7
3,701,440 + Dshi_3521 0.20 +1.6
3,701,448 - Dshi_3521 0.25 +0.5
3,701,553 + +1.1
3,701,561 - +1.9
3,701,561 - +1.4
3,701,682 + Dshi_3522 0.67 +1.8
3,701,685 - Dshi_3522 0.69 +2.7
3,701,685 - Dshi_3522 0.69 +1.5
3,701,685 - Dshi_3522 0.69 +0.1
3,701,762 + +0.9
3,701,832 + +1.7
3,701,887 - -0.1
3,702,074 + Dshi_3523 0.23 +1.9
3,702,093 + Dshi_3523 0.25 +2.6
3,702,112 + Dshi_3523 0.27 +2.3
3,702,120 + Dshi_3523 0.28 +2.0
3,702,125 + Dshi_3523 0.29 +2.3
3,702,136 + Dshi_3523 0.30 -2.9
3,702,173 - Dshi_3523 0.35 +0.1
3,702,244 - Dshi_3523 0.43 +1.2
3,702,268 + Dshi_3523 0.46 +2.5
3,702,342 + Dshi_3523 0.55 +2.5
3,702,350 - Dshi_3523 0.56 +2.4
3,702,490 + Dshi_3523 0.72 -0.1

Or see this region's nucleotide sequence