Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3517 and Dshi_3518 are separated by 35 nucleotides Dshi_3518 and Dshi_3519 are separated by 217 nucleotides
Dshi_3517: Dshi_3517 - chlorophyllide reductase iron protein subunit X (RefSeq), at 3,696,712 to 3,697,719
_3517
Dshi_3518: Dshi_3518 - chlorophyllide reductase subunit Y (RefSeq), at 3,697,755 to 3,699,359
_3518
Dshi_3519: Dshi_3519 - chlorophyllide reductase subunit Z (RefSeq), at 3,699,577 to 3,701,043
_3519
Position (kb)
3697
3698
3699
3700 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3696.785 kb on + strand at 3696.793 kb on - strand at 3696.827 kb on - strand, within Dshi_3517 at 3696.870 kb on - strand, within Dshi_3517 at 3696.972 kb on + strand, within Dshi_3517 at 3697.070 kb on + strand, within Dshi_3517 at 3697.214 kb on - strand, within Dshi_3517 at 3697.239 kb on + strand, within Dshi_3517 at 3697.239 kb on + strand, within Dshi_3517 at 3697.267 kb on + strand, within Dshi_3517 at 3697.279 kb on - strand, within Dshi_3517 at 3697.305 kb on + strand, within Dshi_3517 at 3697.385 kb on + strand, within Dshi_3517 at 3697.393 kb on - strand, within Dshi_3517 at 3697.404 kb on - strand, within Dshi_3517 at 3697.451 kb on + strand, within Dshi_3517 at 3697.459 kb on - strand, within Dshi_3517 at 3697.533 kb on + strand, within Dshi_3517 at 3697.541 kb on - strand, within Dshi_3517 at 3697.541 kb on - strand, within Dshi_3517 at 3697.674 kb on + strand at 3697.729 kb on + strand at 3697.737 kb on - strand at 3697.788 kb on - strand at 3697.851 kb on - strand at 3697.927 kb on + strand, within Dshi_3518 at 3697.999 kb on + strand, within Dshi_3518 at 3698.075 kb on - strand, within Dshi_3518 at 3698.096 kb on - strand, within Dshi_3518 at 3698.142 kb on + strand, within Dshi_3518 at 3698.186 kb on + strand, within Dshi_3518 at 3698.218 kb on - strand, within Dshi_3518 at 3698.257 kb on - strand, within Dshi_3518 at 3698.265 kb on + strand, within Dshi_3518 at 3698.273 kb on - strand, within Dshi_3518 at 3698.274 kb on + strand, within Dshi_3518 at 3698.335 kb on - strand, within Dshi_3518 at 3698.478 kb on + strand, within Dshi_3518 at 3698.486 kb on + strand, within Dshi_3518 at 3698.491 kb on + strand, within Dshi_3518 at 3698.501 kb on + strand, within Dshi_3518 at 3698.501 kb on + strand, within Dshi_3518 at 3698.560 kb on + strand, within Dshi_3518 at 3698.594 kb on - strand, within Dshi_3518 at 3698.624 kb on - strand, within Dshi_3518 at 3698.653 kb on - strand, within Dshi_3518 at 3698.690 kb on - strand, within Dshi_3518 at 3698.832 kb on + strand, within Dshi_3518 at 3698.832 kb on + strand, within Dshi_3518 at 3698.832 kb on - strand, within Dshi_3518 at 3698.855 kb on - strand, within Dshi_3518 at 3699.052 kb on + strand, within Dshi_3518 at 3699.067 kb on + strand, within Dshi_3518 at 3699.123 kb on + strand, within Dshi_3518 at 3699.123 kb on + strand, within Dshi_3518 at 3699.132 kb on + strand, within Dshi_3518 at 3699.151 kb on + strand, within Dshi_3518 at 3699.151 kb on + strand, within Dshi_3518 at 3699.159 kb on - strand, within Dshi_3518 at 3699.230 kb on - strand at 3699.243 kb on + strand at 3699.247 kb on - strand at 3699.530 kb on + strand at 3699.562 kb on + strand at 3699.562 kb on + strand at 3699.570 kb on - strand at 3699.572 kb on + strand at 3699.580 kb on - strand at 3699.580 kb on - strand at 3699.609 kb on + strand at 3699.622 kb on + strand at 3699.622 kb on + strand at 3699.630 kb on - strand at 3699.713 kb on + strand at 3699.716 kb on - strand at 3699.730 kb on + strand, within Dshi_3519 at 3699.757 kb on + strand, within Dshi_3519 at 3699.827 kb on + strand, within Dshi_3519 at 3699.971 kb on + strand, within Dshi_3519 at 3700.257 kb on - strand, within Dshi_3519 at 3700.284 kb on - strand, within Dshi_3519 at 3700.337 kb on + strand, within Dshi_3519
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 3,696,785 + -2.1 3,696,793 - -1.1 3,696,827 - Dshi_3517 0.11 -0.4 3,696,870 - Dshi_3517 0.16 +0.4 3,696,972 + Dshi_3517 0.26 +1.7 3,697,070 + Dshi_3517 0.36 -0.2 3,697,214 - Dshi_3517 0.50 -1.7 3,697,239 + Dshi_3517 0.52 +0.4 3,697,239 + Dshi_3517 0.52 +1.2 3,697,267 + Dshi_3517 0.55 +2.1 3,697,279 - Dshi_3517 0.56 -0.7 3,697,305 + Dshi_3517 0.59 -1.7 3,697,385 + Dshi_3517 0.67 +0.3 3,697,393 - Dshi_3517 0.68 +0.9 3,697,404 - Dshi_3517 0.69 +1.8 3,697,451 + Dshi_3517 0.73 +1.4 3,697,459 - Dshi_3517 0.74 +3.4 3,697,533 + Dshi_3517 0.81 +1.1 3,697,541 - Dshi_3517 0.82 +0.2 3,697,541 - Dshi_3517 0.82 +1.7 3,697,674 + +1.7 3,697,729 + +1.3 3,697,737 - +1.7 3,697,788 - -0.4 3,697,851 - -1.5 3,697,927 + Dshi_3518 0.11 +3.1 3,697,999 + Dshi_3518 0.15 +1.0 3,698,075 - Dshi_3518 0.20 +0.0 3,698,096 - Dshi_3518 0.21 +1.6 3,698,142 + Dshi_3518 0.24 +1.7 3,698,186 + Dshi_3518 0.27 +1.3 3,698,218 - Dshi_3518 0.29 -1.3 3,698,257 - Dshi_3518 0.31 +1.9 3,698,265 + Dshi_3518 0.32 +1.3 3,698,273 - Dshi_3518 0.32 +1.7 3,698,274 + Dshi_3518 0.32 +4.7 3,698,335 - Dshi_3518 0.36 +0.2 3,698,478 + Dshi_3518 0.45 +0.3 3,698,486 + Dshi_3518 0.46 -0.8 3,698,491 + Dshi_3518 0.46 +1.4 3,698,501 + Dshi_3518 0.46 +0.9 3,698,501 + Dshi_3518 0.46 +3.6 3,698,560 + Dshi_3518 0.50 +0.1 3,698,594 - Dshi_3518 0.52 +2.8 3,698,624 - Dshi_3518 0.54 +0.5 3,698,653 - Dshi_3518 0.56 -4.1 3,698,690 - Dshi_3518 0.58 +1.4 3,698,832 + Dshi_3518 0.67 +1.1 3,698,832 + Dshi_3518 0.67 -1.1 3,698,832 - Dshi_3518 0.67 -1.1 3,698,855 - Dshi_3518 0.69 -2.4 3,699,052 + Dshi_3518 0.81 -1.1 3,699,067 + Dshi_3518 0.82 +0.3 3,699,123 + Dshi_3518 0.85 +0.6 3,699,123 + Dshi_3518 0.85 +0.3 3,699,132 + Dshi_3518 0.86 +0.6 3,699,151 + Dshi_3518 0.87 -1.7 3,699,151 + Dshi_3518 0.87 +0.7 3,699,159 - Dshi_3518 0.87 +1.4 3,699,230 - +1.4 3,699,243 + +0.8 3,699,247 - +0.5 3,699,530 + -1.7 3,699,562 + -2.1 3,699,562 + +2.1 3,699,570 - +0.9 3,699,572 + +1.3 3,699,580 - -2.4 3,699,580 - +2.6 3,699,609 + +1.1 3,699,622 + +1.8 3,699,622 + +1.5 3,699,630 - -0.1 3,699,713 + +1.2 3,699,716 - +1.1 3,699,730 + Dshi_3519 0.10 +1.6 3,699,757 + Dshi_3519 0.12 +1.4 3,699,827 + Dshi_3519 0.17 -0.3 3,699,971 + Dshi_3519 0.27 -0.3 3,700,257 - Dshi_3519 0.46 +0.9 3,700,284 - Dshi_3519 0.48 -0.2 3,700,337 + Dshi_3519 0.52 +1.8
Or see this region's nucleotide sequence