Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3200 and Dshi_3201 are separated by 204 nucleotides Dshi_3201 and Dshi_3202 are separated by 74 nucleotides Dshi_3202 and Dshi_3203 are separated by 50 nucleotides Dshi_3203 and Dshi_3204 overlap by 4 nucleotides
Dshi_3200: Dshi_3200 - protein of unknown function DUF861 cupin_3 (RefSeq), at 3,364,993 to 3,365,862
_3200
Dshi_3201: Dshi_3201 - Endoribonuclease L-PSP (RefSeq), at 3,366,067 to 3,366,408
_3201
Dshi_3202: Dshi_3202 - uracil-xanthine permease (RefSeq), at 3,366,483 to 3,367,907
_3202
Dshi_3203: Dshi_3203 - Ureidoglycolate hydrolase (RefSeq), at 3,367,958 to 3,368,452
_3203
Dshi_3204: Dshi_3204 - allantoinase (EC 3.5.2.5); 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) decarboxylase (EC 4.1.1.97) (from data) , at 3,368,449 to 3,369,861
_3204
Position (kb)
3366
3367
3368 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3365.812 kb on - strand at 3365.814 kb on + strand at 3365.922 kb on + strand at 3365.927 kb on + strand at 3365.927 kb on + strand at 3366.038 kb on + strand at 3366.041 kb on - strand at 3366.046 kb on - strand at 3366.078 kb on + strand at 3366.153 kb on + strand, within Dshi_3201 at 3366.161 kb on - strand, within Dshi_3201 at 3366.266 kb on + strand, within Dshi_3201 at 3366.303 kb on - strand, within Dshi_3201 at 3366.348 kb on + strand, within Dshi_3201 at 3366.397 kb on + strand at 3366.405 kb on - strand at 3366.486 kb on + strand at 3366.509 kb on + strand at 3366.509 kb on + strand at 3366.509 kb on + strand at 3366.586 kb on - strand at 3366.620 kb on + strand at 3366.628 kb on - strand, within Dshi_3202 at 3366.694 kb on - strand, within Dshi_3202 at 3366.786 kb on - strand, within Dshi_3202 at 3366.842 kb on + strand, within Dshi_3202 at 3366.842 kb on + strand, within Dshi_3202 at 3366.847 kb on + strand, within Dshi_3202 at 3366.850 kb on - strand, within Dshi_3202 at 3366.860 kb on - strand, within Dshi_3202 at 3366.918 kb on + strand, within Dshi_3202 at 3366.965 kb on - strand, within Dshi_3202 at 3367.104 kb on - strand, within Dshi_3202 at 3367.173 kb on - strand, within Dshi_3202 at 3367.176 kb on + strand, within Dshi_3202 at 3367.203 kb on + strand, within Dshi_3202 at 3367.210 kb on - strand, within Dshi_3202 at 3367.212 kb on + strand, within Dshi_3202 at 3367.221 kb on - strand, within Dshi_3202 at 3367.238 kb on - strand, within Dshi_3202 at 3367.270 kb on - strand, within Dshi_3202 at 3367.306 kb on - strand, within Dshi_3202 at 3367.357 kb on + strand, within Dshi_3202 at 3367.359 kb on + strand, within Dshi_3202 at 3367.401 kb on + strand, within Dshi_3202 at 3367.419 kb on - strand, within Dshi_3202 at 3367.419 kb on - strand, within Dshi_3202 at 3367.421 kb on + strand, within Dshi_3202 at 3367.421 kb on + strand, within Dshi_3202 at 3367.515 kb on - strand, within Dshi_3202 at 3367.534 kb on - strand, within Dshi_3202 at 3367.534 kb on - strand, within Dshi_3202 at 3367.539 kb on + strand, within Dshi_3202 at 3367.557 kb on + strand, within Dshi_3202 at 3367.706 kb on - strand, within Dshi_3202 at 3367.830 kb on - strand at 3367.898 kb on + strand at 3367.898 kb on + strand at 3367.903 kb on + strand at 3367.939 kb on + strand at 3367.979 kb on - strand at 3367.994 kb on - strand at 3368.024 kb on + strand, within Dshi_3203 at 3368.024 kb on + strand, within Dshi_3203 at 3368.072 kb on + strand, within Dshi_3203 at 3368.124 kb on - strand, within Dshi_3203 at 3368.125 kb on - strand, within Dshi_3203 at 3368.189 kb on + strand, within Dshi_3203 at 3368.215 kb on + strand, within Dshi_3203 at 3368.318 kb on - strand, within Dshi_3203 at 3368.382 kb on + strand, within Dshi_3203 at 3368.453 kb on + strand at 3368.478 kb on + strand at 3368.486 kb on - strand at 3368.545 kb on + strand at 3368.564 kb on + strand at 3368.578 kb on - strand at 3368.609 kb on - strand, within Dshi_3204 at 3368.674 kb on + strand, within Dshi_3204 at 3368.674 kb on + strand, within Dshi_3204 at 3368.681 kb on - strand, within Dshi_3204 at 3368.857 kb on - strand, within Dshi_3204 at 3368.882 kb on + strand, within Dshi_3204 at 3368.882 kb on + strand, within Dshi_3204 at 3368.883 kb on + strand, within Dshi_3204
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 3,365,812 - -0.2 3,365,814 + +0.4 3,365,922 + +2.0 3,365,927 + -1.0 3,365,927 + -0.4 3,366,038 + +0.2 3,366,041 - +1.8 3,366,046 - +0.1 3,366,078 + +0.4 3,366,153 + Dshi_3201 0.25 +1.4 3,366,161 - Dshi_3201 0.27 -0.6 3,366,266 + Dshi_3201 0.58 -0.6 3,366,303 - Dshi_3201 0.69 +1.8 3,366,348 + Dshi_3201 0.82 -0.9 3,366,397 + -1.8 3,366,405 - -1.0 3,366,486 + +0.4 3,366,509 + +0.4 3,366,509 + -0.3 3,366,509 + -0.4 3,366,586 - -1.0 3,366,620 + -0.7 3,366,628 - Dshi_3202 0.10 +0.5 3,366,694 - Dshi_3202 0.15 +0.6 3,366,786 - Dshi_3202 0.21 -0.9 3,366,842 + Dshi_3202 0.25 -3.4 3,366,842 + Dshi_3202 0.25 +0.3 3,366,847 + Dshi_3202 0.26 -0.9 3,366,850 - Dshi_3202 0.26 -1.0 3,366,860 - Dshi_3202 0.26 -0.5 3,366,918 + Dshi_3202 0.31 +0.4 3,366,965 - Dshi_3202 0.34 -0.1 3,367,104 - Dshi_3202 0.44 -1.0 3,367,173 - Dshi_3202 0.48 -0.2 3,367,176 + Dshi_3202 0.49 -1.7 3,367,203 + Dshi_3202 0.51 +0.4 3,367,210 - Dshi_3202 0.51 +0.7 3,367,212 + Dshi_3202 0.51 +0.4 3,367,221 - Dshi_3202 0.52 +0.3 3,367,238 - Dshi_3202 0.53 -0.2 3,367,270 - Dshi_3202 0.55 -1.0 3,367,306 - Dshi_3202 0.58 -1.0 3,367,357 + Dshi_3202 0.61 +1.4 3,367,359 + Dshi_3202 0.61 -1.6 3,367,401 + Dshi_3202 0.64 -0.3 3,367,419 - Dshi_3202 0.66 +0.5 3,367,419 - Dshi_3202 0.66 -3.4 3,367,421 + Dshi_3202 0.66 +1.0 3,367,421 + Dshi_3202 0.66 +0.2 3,367,515 - Dshi_3202 0.72 +1.6 3,367,534 - Dshi_3202 0.74 -0.6 3,367,534 - Dshi_3202 0.74 +1.4 3,367,539 + Dshi_3202 0.74 -0.4 3,367,557 + Dshi_3202 0.75 -1.0 3,367,706 - Dshi_3202 0.86 +0.8 3,367,830 - +0.6 3,367,898 + +0.9 3,367,898 + +0.0 3,367,903 + -0.6 3,367,939 + +0.4 3,367,979 - -0.1 3,367,994 - +1.0 3,368,024 + Dshi_3203 0.13 -0.3 3,368,024 + Dshi_3203 0.13 +2.2 3,368,072 + Dshi_3203 0.23 +1.4 3,368,124 - Dshi_3203 0.34 +2.0 3,368,125 - Dshi_3203 0.34 +1.4 3,368,189 + Dshi_3203 0.47 -1.6 3,368,215 + Dshi_3203 0.52 +1.0 3,368,318 - Dshi_3203 0.73 +1.9 3,368,382 + Dshi_3203 0.86 -0.9 3,368,453 + +1.0 3,368,478 + -1.0 3,368,486 - +1.0 3,368,545 + +0.3 3,368,564 + +2.8 3,368,578 - +0.3 3,368,609 - Dshi_3204 0.11 +2.4 3,368,674 + Dshi_3204 0.16 +0.5 3,368,674 + Dshi_3204 0.16 +0.0 3,368,681 - Dshi_3204 0.16 -1.3 3,368,857 - Dshi_3204 0.29 -0.2 3,368,882 + Dshi_3204 0.31 -1.6 3,368,882 + Dshi_3204 0.31 +0.9 3,368,883 + Dshi_3204 0.31 -0.0
Or see this region's nucleotide sequence