Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3077 and Dshi_3078 are separated by 63 nucleotides Dshi_3078 and Dshi_3079 overlap by 4 nucleotides Dshi_3079 and Dshi_3080 are separated by 93 nucleotides
Dshi_3077: Dshi_3077 - hypothetical protein (RefSeq), at 3,245,223 to 3,246,209
_3077
Dshi_3078: Dshi_3078 - AzlC family protein (RefSeq), at 3,246,273 to 3,246,977
_3078
Dshi_3079: Dshi_3079 - branched-chain amino acid transport (RefSeq), at 3,246,974 to 3,247,306
_3079
Dshi_3080: Dshi_3080 - efflux transporter, RND family, MFP subunit (RefSeq), at 3,247,400 to 3,248,863
_3080
Position (kb)
3246
3247
3248 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3246.122 kb on - strand at 3246.217 kb on + strand at 3246.270 kb on + strand at 3246.369 kb on - strand at 3246.491 kb on - strand, within Dshi_3078 at 3246.607 kb on - strand, within Dshi_3078 at 3246.726 kb on - strand, within Dshi_3078 at 3246.819 kb on - strand, within Dshi_3078 at 3246.881 kb on - strand, within Dshi_3078 at 3247.018 kb on + strand, within Dshi_3079 at 3247.310 kb on - strand at 3247.310 kb on - strand at 3247.365 kb on + strand at 3247.368 kb on - strand at 3247.368 kb on - strand at 3247.384 kb on - strand at 3247.391 kb on + strand at 3247.481 kb on - strand at 3247.551 kb on - strand, within Dshi_3080 at 3247.566 kb on + strand, within Dshi_3080 at 3247.574 kb on - strand, within Dshi_3080 at 3247.629 kb on - strand, within Dshi_3080 at 3247.637 kb on - strand, within Dshi_3080 at 3247.670 kb on + strand, within Dshi_3080 at 3247.690 kb on + strand, within Dshi_3080 at 3247.723 kb on - strand, within Dshi_3080 at 3247.787 kb on + strand, within Dshi_3080 at 3247.815 kb on + strand, within Dshi_3080 at 3247.948 kb on + strand, within Dshi_3080 at 3248.031 kb on - strand, within Dshi_3080 at 3248.033 kb on + strand, within Dshi_3080 at 3248.265 kb on + strand, within Dshi_3080
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 3,246,122 - +0.0 3,246,217 + +0.2 3,246,270 + -1.6 3,246,369 - -1.6 3,246,491 - Dshi_3078 0.31 -0.6 3,246,607 - Dshi_3078 0.47 +0.5 3,246,726 - Dshi_3078 0.64 +1.2 3,246,819 - Dshi_3078 0.77 +1.0 3,246,881 - Dshi_3078 0.86 +0.9 3,247,018 + Dshi_3079 0.13 +0.3 3,247,310 - +1.0 3,247,310 - +0.0 3,247,365 + +0.6 3,247,368 - +0.2 3,247,368 - -0.5 3,247,384 - +0.0 3,247,391 + -0.7 3,247,481 - +0.8 3,247,551 - Dshi_3080 0.10 +0.3 3,247,566 + Dshi_3080 0.11 -0.4 3,247,574 - Dshi_3080 0.12 +0.8 3,247,629 - Dshi_3080 0.16 -2.3 3,247,637 - Dshi_3080 0.16 -0.3 3,247,670 + Dshi_3080 0.18 -0.5 3,247,690 + Dshi_3080 0.20 -0.5 3,247,723 - Dshi_3080 0.22 +1.2 3,247,787 + Dshi_3080 0.26 -3.7 3,247,815 + Dshi_3080 0.28 -1.8 3,247,948 + Dshi_3080 0.37 -1.5 3,248,031 - Dshi_3080 0.43 +0.4 3,248,033 + Dshi_3080 0.43 +0.2 3,248,265 + Dshi_3080 0.59 -0.7
Or see this region's nucleotide sequence