Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3079

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3077 and Dshi_3078 are separated by 63 nucleotidesDshi_3078 and Dshi_3079 overlap by 4 nucleotidesDshi_3079 and Dshi_3080 are separated by 93 nucleotides Dshi_3077: Dshi_3077 - hypothetical protein (RefSeq), at 3,245,223 to 3,246,209 _3077 Dshi_3078: Dshi_3078 - AzlC family protein (RefSeq), at 3,246,273 to 3,246,977 _3078 Dshi_3079: Dshi_3079 - branched-chain amino acid transport (RefSeq), at 3,246,974 to 3,247,306 _3079 Dshi_3080: Dshi_3080 - efflux transporter, RND family, MFP subunit (RefSeq), at 3,247,400 to 3,248,863 _3080 Position (kb) 3246 3247 3248Strain fitness (log2 ratio) -3 -2 -1 0 1at 3246.122 kb on - strandat 3246.217 kb on + strandat 3246.270 kb on + strandat 3246.369 kb on - strandat 3246.491 kb on - strand, within Dshi_3078at 3246.607 kb on - strand, within Dshi_3078at 3246.726 kb on - strand, within Dshi_3078at 3246.819 kb on - strand, within Dshi_3078at 3246.881 kb on - strand, within Dshi_3078at 3247.018 kb on + strand, within Dshi_3079at 3247.310 kb on - strandat 3247.310 kb on - strandat 3247.365 kb on + strandat 3247.368 kb on - strandat 3247.368 kb on - strandat 3247.384 kb on - strandat 3247.391 kb on + strandat 3247.481 kb on - strandat 3247.551 kb on - strand, within Dshi_3080at 3247.566 kb on + strand, within Dshi_3080at 3247.574 kb on - strand, within Dshi_3080at 3247.629 kb on - strand, within Dshi_3080at 3247.637 kb on - strand, within Dshi_3080at 3247.670 kb on + strand, within Dshi_3080at 3247.690 kb on + strand, within Dshi_3080at 3247.723 kb on - strand, within Dshi_3080at 3247.787 kb on + strand, within Dshi_3080at 3247.815 kb on + strand, within Dshi_3080at 3247.948 kb on + strand, within Dshi_3080at 3248.031 kb on - strand, within Dshi_3080at 3248.033 kb on + strand, within Dshi_3080at 3248.265 kb on + strand, within Dshi_3080

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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3,246,122 - +0.0
3,246,217 + +0.2
3,246,270 + -1.6
3,246,369 - -1.6
3,246,491 - Dshi_3078 0.31 -0.6
3,246,607 - Dshi_3078 0.47 +0.5
3,246,726 - Dshi_3078 0.64 +1.2
3,246,819 - Dshi_3078 0.77 +1.0
3,246,881 - Dshi_3078 0.86 +0.9
3,247,018 + Dshi_3079 0.13 +0.3
3,247,310 - +1.0
3,247,310 - +0.0
3,247,365 + +0.6
3,247,368 - +0.2
3,247,368 - -0.5
3,247,384 - +0.0
3,247,391 + -0.7
3,247,481 - +0.8
3,247,551 - Dshi_3080 0.10 +0.3
3,247,566 + Dshi_3080 0.11 -0.4
3,247,574 - Dshi_3080 0.12 +0.8
3,247,629 - Dshi_3080 0.16 -2.3
3,247,637 - Dshi_3080 0.16 -0.3
3,247,670 + Dshi_3080 0.18 -0.5
3,247,690 + Dshi_3080 0.20 -0.5
3,247,723 - Dshi_3080 0.22 +1.2
3,247,787 + Dshi_3080 0.26 -3.7
3,247,815 + Dshi_3080 0.28 -1.8
3,247,948 + Dshi_3080 0.37 -1.5
3,248,031 - Dshi_3080 0.43 +0.4
3,248,033 + Dshi_3080 0.43 +0.2
3,248,265 + Dshi_3080 0.59 -0.7

Or see this region's nucleotide sequence