Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2758

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2757 and Dshi_2758 are separated by 101 nucleotidesDshi_2758 and Dshi_2759 overlap by 4 nucleotides Dshi_2757: Dshi_2757 - Alkanesulfonate monooxygenase (RefSeq), at 2,918,302 to 2,919,456 _2757 Dshi_2758: Dshi_2758 - transcriptional regulator, GntR family (RefSeq), at 2,919,558 to 2,920,268 _2758 Dshi_2759: Dshi_2759 - oxidoreductase domain protein (RefSeq), at 2,920,265 to 2,921,386 _2759 Position (kb) 2919 2920 2921Strain fitness (log2 ratio) -3 -2 -1 0 1at 2918.558 kb on + strand, within Dshi_2757at 2918.724 kb on - strand, within Dshi_2757at 2918.802 kb on - strand, within Dshi_2757at 2918.914 kb on - strand, within Dshi_2757at 2918.960 kb on + strand, within Dshi_2757at 2918.968 kb on - strand, within Dshi_2757at 2919.000 kb on + strand, within Dshi_2757at 2919.013 kb on - strand, within Dshi_2757at 2919.015 kb on + strand, within Dshi_2757at 2919.070 kb on + strand, within Dshi_2757at 2919.148 kb on - strand, within Dshi_2757at 2919.269 kb on - strand, within Dshi_2757at 2919.282 kb on - strand, within Dshi_2757at 2919.326 kb on - strand, within Dshi_2757at 2919.410 kb on - strandat 2919.419 kb on - strandat 2919.491 kb on + strandat 2919.550 kb on - strandat 2919.558 kb on + strandat 2919.578 kb on + strandat 2919.632 kb on - strand, within Dshi_2758at 2919.665 kb on + strand, within Dshi_2758at 2919.722 kb on + strand, within Dshi_2758at 2919.729 kb on + strand, within Dshi_2758at 2919.750 kb on + strand, within Dshi_2758at 2919.797 kb on + strand, within Dshi_2758at 2919.805 kb on - strand, within Dshi_2758at 2919.934 kb on - strand, within Dshi_2758at 2920.082 kb on - strand, within Dshi_2758at 2920.255 kb on + strandat 2920.337 kb on - strandat 2920.374 kb on - strandat 2920.546 kb on - strand, within Dshi_2759at 2920.622 kb on - strand, within Dshi_2759at 2920.624 kb on + strand, within Dshi_2759at 2920.689 kb on - strand, within Dshi_2759at 2920.825 kb on + strand, within Dshi_2759at 2920.880 kb on + strand, within Dshi_2759at 2920.892 kb on + strand, within Dshi_2759at 2920.977 kb on + strand, within Dshi_2759at 2920.985 kb on - strand, within Dshi_2759at 2921.245 kb on + strand, within Dshi_2759at 2921.245 kb on + strand, within Dshi_2759at 2921.245 kb on + strand, within Dshi_2759at 2921.245 kb on + strand, within Dshi_2759at 2921.253 kb on - strand, within Dshi_2759at 2921.253 kb on - strand, within Dshi_2759at 2921.265 kb on + strand, within Dshi_2759

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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2,918,558 + Dshi_2757 0.22 -0.5
2,918,724 - Dshi_2757 0.37 -3.5
2,918,802 - Dshi_2757 0.43 +0.2
2,918,914 - Dshi_2757 0.53 +1.2
2,918,960 + Dshi_2757 0.57 +1.4
2,918,968 - Dshi_2757 0.58 +0.5
2,919,000 + Dshi_2757 0.60 +0.3
2,919,013 - Dshi_2757 0.62 +1.0
2,919,015 + Dshi_2757 0.62 -1.2
2,919,070 + Dshi_2757 0.66 +0.7
2,919,148 - Dshi_2757 0.73 -0.0
2,919,269 - Dshi_2757 0.84 +1.0
2,919,282 - Dshi_2757 0.85 -0.1
2,919,326 - Dshi_2757 0.89 -0.5
2,919,410 - +0.8
2,919,419 - -2.7
2,919,491 + -3.0
2,919,550 - +0.3
2,919,558 + -0.2
2,919,578 + -0.1
2,919,632 - Dshi_2758 0.10 -0.7
2,919,665 + Dshi_2758 0.15 -1.2
2,919,722 + Dshi_2758 0.23 +1.0
2,919,729 + Dshi_2758 0.24 +1.6
2,919,750 + Dshi_2758 0.27 +0.4
2,919,797 + Dshi_2758 0.34 +0.4
2,919,805 - Dshi_2758 0.35 -1.8
2,919,934 - Dshi_2758 0.53 +0.4
2,920,082 - Dshi_2758 0.74 +1.3
2,920,255 + +0.8
2,920,337 - -1.3
2,920,374 - -0.4
2,920,546 - Dshi_2759 0.25 -0.2
2,920,622 - Dshi_2759 0.32 -0.1
2,920,624 + Dshi_2759 0.32 -0.2
2,920,689 - Dshi_2759 0.38 +0.1
2,920,825 + Dshi_2759 0.50 -0.0
2,920,880 + Dshi_2759 0.55 -3.1
2,920,892 + Dshi_2759 0.56 +1.1
2,920,977 + Dshi_2759 0.63 +0.9
2,920,985 - Dshi_2759 0.64 +0.2
2,921,245 + Dshi_2759 0.87 -0.0
2,921,245 + Dshi_2759 0.87 +0.1
2,921,245 + Dshi_2759 0.87 -3.3
2,921,245 + Dshi_2759 0.87 +0.7
2,921,253 - Dshi_2759 0.88 +1.0
2,921,253 - Dshi_2759 0.88 +0.6
2,921,265 + Dshi_2759 0.89 +0.5

Or see this region's nucleotide sequence