Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2542

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2541 and Dshi_2542 are separated by 183 nucleotidesDshi_2542 and Dshi_2543 are separated by 30 nucleotides Dshi_2541: Dshi_2541 - GntR domain protein (RefSeq), at 2,697,654 to 2,698,334 _2541 Dshi_2542: Dshi_2542 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (RefSeq), at 2,698,518 to 2,699,444 _2542 Dshi_2543: Dshi_2543 - NMT1/THI5 like domain protein (RefSeq), at 2,699,475 to 2,700,533 _2543 Position (kb) 2698 2699 2700Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2697.524 kb on + strandat 2697.525 kb on - strandat 2697.543 kb on + strandat 2697.641 kb on - strandat 2697.649 kb on - strandat 2697.649 kb on - strandat 2697.652 kb on + strandat 2697.652 kb on + strandat 2697.669 kb on - strandat 2697.673 kb on + strandat 2697.725 kb on - strand, within Dshi_2541at 2697.744 kb on + strand, within Dshi_2541at 2697.821 kb on - strand, within Dshi_2541at 2697.832 kb on - strand, within Dshi_2541at 2697.835 kb on - strand, within Dshi_2541at 2697.888 kb on + strand, within Dshi_2541at 2697.935 kb on + strand, within Dshi_2541at 2697.935 kb on + strand, within Dshi_2541at 2697.971 kb on + strand, within Dshi_2541at 2697.974 kb on - strand, within Dshi_2541at 2698.027 kb on + strand, within Dshi_2541at 2698.056 kb on - strand, within Dshi_2541at 2698.063 kb on + strand, within Dshi_2541at 2698.063 kb on + strand, within Dshi_2541at 2698.071 kb on - strand, within Dshi_2541at 2698.231 kb on + strand, within Dshi_2541at 2698.279 kb on - strandat 2698.383 kb on - strandat 2698.407 kb on - strandat 2698.409 kb on + strandat 2698.442 kb on - strandat 2698.466 kb on - strandat 2698.508 kb on + strandat 2698.516 kb on + strandat 2698.558 kb on - strandat 2698.584 kb on + strandat 2698.584 kb on + strandat 2698.597 kb on - strandat 2698.643 kb on - strand, within Dshi_2542at 2698.674 kb on + strand, within Dshi_2542at 2698.774 kb on - strand, within Dshi_2542at 2698.809 kb on + strand, within Dshi_2542at 2698.809 kb on + strand, within Dshi_2542at 2698.809 kb on + strand, within Dshi_2542at 2698.809 kb on + strand, within Dshi_2542at 2698.809 kb on + strandat 2698.817 kb on - strand, within Dshi_2542at 2698.829 kb on - strand, within Dshi_2542at 2698.855 kb on - strand, within Dshi_2542at 2698.932 kb on + strand, within Dshi_2542at 2698.980 kb on - strand, within Dshi_2542at 2699.004 kb on - strand, within Dshi_2542at 2699.014 kb on + strand, within Dshi_2542at 2699.045 kb on + strand, within Dshi_2542at 2699.088 kb on - strand, within Dshi_2542at 2699.131 kb on + strand, within Dshi_2542at 2699.131 kb on + strand, within Dshi_2542at 2699.131 kb on + strand, within Dshi_2542at 2699.131 kb on + strand, within Dshi_2542at 2699.139 kb on - strand, within Dshi_2542at 2699.139 kb on - strand, within Dshi_2542at 2699.139 kb on - strand, within Dshi_2542at 2699.290 kb on - strand, within Dshi_2542at 2699.296 kb on + strand, within Dshi_2542at 2699.369 kb on + strandat 2699.369 kb on + strandat 2699.418 kb on + strandat 2699.418 kb on + strandat 2699.447 kb on - strandat 2699.502 kb on + strandat 2699.510 kb on - strandat 2699.618 kb on + strand, within Dshi_2543at 2699.618 kb on + strand, within Dshi_2543at 2699.618 kb on + strand, within Dshi_2543at 2699.626 kb on - strand, within Dshi_2543at 2699.626 kb on - strand, within Dshi_2543at 2699.633 kb on + strand, within Dshi_2543at 2699.659 kb on + strand, within Dshi_2543at 2699.688 kb on + strand, within Dshi_2543at 2699.820 kb on + strand, within Dshi_2543at 2699.874 kb on + strand, within Dshi_2543at 2699.974 kb on + strand, within Dshi_2543at 2700.142 kb on + strand, within Dshi_2543at 2700.209 kb on + strand, within Dshi_2543at 2700.216 kb on + strand, within Dshi_2543at 2700.216 kb on + strand, within Dshi_2543at 2700.240 kb on + strand, within Dshi_2543at 2700.248 kb on - strand, within Dshi_2543at 2700.321 kb on - strand, within Dshi_2543at 2700.328 kb on - strand, within Dshi_2543at 2700.344 kb on + strand, within Dshi_2543at 2700.344 kb on + strand, within Dshi_2543at 2700.362 kb on - strand, within Dshi_2543at 2700.398 kb on - strand, within Dshi_2543at 2700.398 kb on - strand, within Dshi_2543at 2700.409 kb on - strand, within Dshi_2543at 2700.413 kb on + strand, within Dshi_2543

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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2,697,524 + -0.5
2,697,525 - -1.1
2,697,543 + +0.6
2,697,641 - -2.1
2,697,649 - -1.8
2,697,649 - -0.6
2,697,652 + -2.3
2,697,652 + +0.0
2,697,669 - -0.0
2,697,673 + -0.8
2,697,725 - Dshi_2541 0.10 -2.8
2,697,744 + Dshi_2541 0.13 +0.0
2,697,821 - Dshi_2541 0.25 -2.0
2,697,832 - Dshi_2541 0.26 +0.8
2,697,835 - Dshi_2541 0.27 -0.4
2,697,888 + Dshi_2541 0.34 -0.1
2,697,935 + Dshi_2541 0.41 +0.3
2,697,935 + Dshi_2541 0.41 +1.6
2,697,971 + Dshi_2541 0.47 -1.2
2,697,974 - Dshi_2541 0.47 +1.0
2,698,027 + Dshi_2541 0.55 +0.6
2,698,056 - Dshi_2541 0.59 +2.4
2,698,063 + Dshi_2541 0.60 +0.6
2,698,063 + Dshi_2541 0.60 +0.3
2,698,071 - Dshi_2541 0.61 +0.6
2,698,231 + Dshi_2541 0.85 -1.6
2,698,279 - +0.6
2,698,383 - -1.6
2,698,407 - +2.0
2,698,409 + +0.0
2,698,442 - -2.4
2,698,466 - -2.6
2,698,508 + +0.7
2,698,516 + -0.2
2,698,558 - -0.5
2,698,584 + -0.1
2,698,584 + -0.8
2,698,597 - +0.8
2,698,643 - Dshi_2542 0.13 -0.7
2,698,674 + Dshi_2542 0.17 +0.3
2,698,774 - Dshi_2542 0.28 +0.7
2,698,809 + Dshi_2542 0.31 +0.0
2,698,809 + Dshi_2542 0.31 +0.9
2,698,809 + Dshi_2542 0.31 +0.2
2,698,809 + Dshi_2542 0.31 +1.0
2,698,809 + +0.0
2,698,817 - Dshi_2542 0.32 +0.0
2,698,829 - Dshi_2542 0.34 +1.8
2,698,855 - Dshi_2542 0.36 +0.2
2,698,932 + Dshi_2542 0.45 -2.3
2,698,980 - Dshi_2542 0.50 -2.4
2,699,004 - Dshi_2542 0.52 +0.9
2,699,014 + Dshi_2542 0.54 +1.0
2,699,045 + Dshi_2542 0.57 +1.4
2,699,088 - Dshi_2542 0.61 -1.5
2,699,131 + Dshi_2542 0.66 +0.0
2,699,131 + Dshi_2542 0.66 +0.4
2,699,131 + Dshi_2542 0.66 -0.9
2,699,131 + Dshi_2542 0.66 +1.0
2,699,139 - Dshi_2542 0.67 -1.6
2,699,139 - Dshi_2542 0.67 -1.0
2,699,139 - Dshi_2542 0.67 -0.6
2,699,290 - Dshi_2542 0.83 -2.0
2,699,296 + Dshi_2542 0.84 -1.0
2,699,369 + +0.3
2,699,369 + -0.3
2,699,418 + +0.9
2,699,418 + +0.6
2,699,447 - +0.3
2,699,502 + -2.0
2,699,510 - -0.4
2,699,618 + Dshi_2543 0.14 -0.3
2,699,618 + Dshi_2543 0.14 +0.6
2,699,618 + Dshi_2543 0.14 +1.7
2,699,626 - Dshi_2543 0.14 +0.1
2,699,626 - Dshi_2543 0.14 -3.6
2,699,633 + Dshi_2543 0.15 -0.7
2,699,659 + Dshi_2543 0.17 -0.4
2,699,688 + Dshi_2543 0.20 -2.4
2,699,820 + Dshi_2543 0.33 +0.7
2,699,874 + Dshi_2543 0.38 -1.0
2,699,974 + Dshi_2543 0.47 -0.3
2,700,142 + Dshi_2543 0.63 -2.3
2,700,209 + Dshi_2543 0.69 +1.7
2,700,216 + Dshi_2543 0.70 -0.0
2,700,216 + Dshi_2543 0.70 -0.7
2,700,240 + Dshi_2543 0.72 -1.6
2,700,248 - Dshi_2543 0.73 -1.5
2,700,321 - Dshi_2543 0.80 +1.2
2,700,328 - Dshi_2543 0.81 +0.9
2,700,344 + Dshi_2543 0.82 -1.5
2,700,344 + Dshi_2543 0.82 +0.5
2,700,362 - Dshi_2543 0.84 -1.1
2,700,398 - Dshi_2543 0.87 +0.2
2,700,398 - Dshi_2543 0.87 -0.3
2,700,409 - Dshi_2543 0.88 +0.2
2,700,413 + Dshi_2543 0.89 +0.8

Or see this region's nucleotide sequence