Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2113 and Dshi_2114 are separated by 82 nucleotides Dshi_2114 and Dshi_2115 are separated by 13 nucleotides Dshi_2115 and Dshi_2116 overlap by 4 nucleotides Dshi_2116 and Dshi_2117 are separated by 12 nucleotides
Dshi_2113: Dshi_2113 - Glycine hydroxymethyltransferase (RefSeq), at 2,241,420 to 2,242,694
_2113
Dshi_2114: Dshi_2114 - Sarcosine oxidase gamma subunit (RefSeq), at 2,242,777 to 2,243,307
_2114
Dshi_2115: Dshi_2115 - sarcosine oxidase, alpha subunit family (RefSeq), at 2,243,321 to 2,246,323
_2115
Dshi_2116: Dshi_2116 - sarcosine oxidase, delta subunit family (RefSeq), at 2,246,320 to 2,246,619
_2116
Dshi_2117: Dshi_2117 - sarcosine oxidase, beta subunit family (RefSeq), at 2,246,632 to 2,247,885
_2117
Position (kb)
2243
2244
2245
2246
2247 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2242.342 kb on + strand, within Dshi_2113 at 2242.342 kb on - strand, within Dshi_2113 at 2242.475 kb on - strand, within Dshi_2113 at 2242.475 kb on - strand, within Dshi_2113 at 2242.495 kb on - strand, within Dshi_2113 at 2242.725 kb on - strand at 2242.776 kb on + strand at 2242.820 kb on - strand at 2243.028 kb on + strand, within Dshi_2114 at 2243.028 kb on + strand, within Dshi_2114 at 2243.083 kb on + strand, within Dshi_2114 at 2243.137 kb on - strand, within Dshi_2114 at 2243.139 kb on - strand, within Dshi_2114 at 2243.139 kb on - strand, within Dshi_2114 at 2243.185 kb on + strand, within Dshi_2114 at 2243.193 kb on - strand, within Dshi_2114 at 2243.214 kb on - strand, within Dshi_2114 at 2243.309 kb on + strand at 2243.330 kb on - strand at 2243.431 kb on + strand at 2243.487 kb on - strand at 2243.737 kb on - strand at 2243.747 kb on - strand, within Dshi_2115 at 2243.799 kb on + strand, within Dshi_2115 at 2243.820 kb on + strand, within Dshi_2115 at 2243.848 kb on - strand, within Dshi_2115 at 2243.931 kb on + strand, within Dshi_2115 at 2243.951 kb on - strand, within Dshi_2115 at 2244.255 kb on + strand, within Dshi_2115 at 2244.262 kb on + strand, within Dshi_2115 at 2244.263 kb on - strand, within Dshi_2115 at 2244.315 kb on + strand, within Dshi_2115 at 2244.326 kb on + strand, within Dshi_2115 at 2244.333 kb on - strand, within Dshi_2115 at 2244.392 kb on - strand, within Dshi_2115 at 2244.392 kb on - strand, within Dshi_2115 at 2244.438 kb on - strand, within Dshi_2115 at 2244.494 kb on - strand, within Dshi_2115 at 2244.584 kb on + strand, within Dshi_2115 at 2244.623 kb on + strand, within Dshi_2115 at 2244.626 kb on - strand, within Dshi_2115 at 2244.677 kb on - strand, within Dshi_2115 at 2244.704 kb on + strand, within Dshi_2115 at 2244.999 kb on + strand, within Dshi_2115 at 2244.999 kb on + strand, within Dshi_2115 at 2245.029 kb on + strand, within Dshi_2115 at 2245.076 kb on + strand, within Dshi_2115 at 2245.185 kb on + strand, within Dshi_2115 at 2245.209 kb on + strand, within Dshi_2115 at 2245.375 kb on + strand, within Dshi_2115 at 2245.377 kb on + strand, within Dshi_2115 at 2245.496 kb on - strand, within Dshi_2115 at 2245.496 kb on - strand, within Dshi_2115 at 2245.625 kb on + strand, within Dshi_2115 at 2245.635 kb on + strand, within Dshi_2115 at 2245.860 kb on - strand, within Dshi_2115 at 2245.939 kb on - strand, within Dshi_2115 at 2246.133 kb on + strand at 2246.136 kb on - strand at 2246.136 kb on - strand at 2246.237 kb on - strand at 2246.239 kb on + strand at 2246.274 kb on + strand at 2246.356 kb on + strand, within Dshi_2116 at 2246.356 kb on + strand, within Dshi_2116 at 2246.375 kb on - strand, within Dshi_2116 at 2246.378 kb on + strand, within Dshi_2116 at 2246.419 kb on - strand, within Dshi_2116 at 2246.465 kb on + strand, within Dshi_2116 at 2246.473 kb on - strand, within Dshi_2116 at 2246.473 kb on - strand, within Dshi_2116 at 2246.505 kb on + strand, within Dshi_2116 at 2246.513 kb on - strand, within Dshi_2116 at 2246.517 kb on + strand, within Dshi_2116 at 2246.517 kb on + strand, within Dshi_2116 at 2246.525 kb on - strand, within Dshi_2116 at 2246.539 kb on + strand, within Dshi_2116 at 2246.695 kb on + strand at 2246.738 kb on + strand at 2246.738 kb on + strand at 2246.738 kb on + strand at 2246.746 kb on - strand at 2246.746 kb on - strand at 2246.771 kb on + strand, within Dshi_2117 at 2246.780 kb on - strand, within Dshi_2117 at 2246.813 kb on + strand, within Dshi_2117 at 2246.860 kb on - strand, within Dshi_2117 at 2246.975 kb on - strand, within Dshi_2117 at 2246.975 kb on - strand, within Dshi_2117 at 2247.110 kb on - strand, within Dshi_2117 at 2247.130 kb on + strand, within Dshi_2117 at 2247.155 kb on + strand, within Dshi_2117 at 2247.207 kb on - strand, within Dshi_2117 at 2247.317 kb on + strand, within Dshi_2117
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 2,242,342 + Dshi_2113 0.72 -2.8 2,242,342 - Dshi_2113 0.72 -0.4 2,242,475 - Dshi_2113 0.83 +1.2 2,242,475 - Dshi_2113 0.83 -1.0 2,242,495 - Dshi_2113 0.84 -0.6 2,242,725 - -0.6 2,242,776 + -1.0 2,242,820 - -2.0 2,243,028 + Dshi_2114 0.47 +0.1 2,243,028 + Dshi_2114 0.47 -1.0 2,243,083 + Dshi_2114 0.58 +0.4 2,243,137 - Dshi_2114 0.68 +0.3 2,243,139 - Dshi_2114 0.68 +2.1 2,243,139 - Dshi_2114 0.68 -2.0 2,243,185 + Dshi_2114 0.77 -0.1 2,243,193 - Dshi_2114 0.78 +0.5 2,243,214 - Dshi_2114 0.82 +0.3 2,243,309 + -0.9 2,243,330 - +0.0 2,243,431 + +0.5 2,243,487 - +0.3 2,243,737 - +1.0 2,243,747 - Dshi_2115 0.14 +1.1 2,243,799 + Dshi_2115 0.16 +0.6 2,243,820 + Dshi_2115 0.17 +1.0 2,243,848 - Dshi_2115 0.18 +1.0 2,243,931 + Dshi_2115 0.20 -2.8 2,243,951 - Dshi_2115 0.21 -2.7 2,244,255 + Dshi_2115 0.31 -1.0 2,244,262 + Dshi_2115 0.31 -0.4 2,244,263 - Dshi_2115 0.31 -1.1 2,244,315 + Dshi_2115 0.33 +0.8 2,244,326 + Dshi_2115 0.33 -2.0 2,244,333 - Dshi_2115 0.34 -3.3 2,244,392 - Dshi_2115 0.36 +1.7 2,244,392 - Dshi_2115 0.36 -2.6 2,244,438 - Dshi_2115 0.37 +0.2 2,244,494 - Dshi_2115 0.39 +2.1 2,244,584 + Dshi_2115 0.42 -0.9 2,244,623 + Dshi_2115 0.43 +1.3 2,244,626 - Dshi_2115 0.43 +0.5 2,244,677 - Dshi_2115 0.45 -3.0 2,244,704 + Dshi_2115 0.46 +0.1 2,244,999 + Dshi_2115 0.56 -1.6 2,244,999 + Dshi_2115 0.56 +2.4 2,245,029 + Dshi_2115 0.57 +0.7 2,245,076 + Dshi_2115 0.58 +0.5 2,245,185 + Dshi_2115 0.62 -1.0 2,245,209 + Dshi_2115 0.63 +0.5 2,245,375 + Dshi_2115 0.68 +2.6 2,245,377 + Dshi_2115 0.68 +0.6 2,245,496 - Dshi_2115 0.72 +1.2 2,245,496 - Dshi_2115 0.72 -0.9 2,245,625 + Dshi_2115 0.77 -0.2 2,245,635 + Dshi_2115 0.77 +0.7 2,245,860 - Dshi_2115 0.85 +0.5 2,245,939 - Dshi_2115 0.87 +1.0 2,246,133 + +0.3 2,246,136 - +0.7 2,246,136 - +1.2 2,246,237 - +0.2 2,246,239 + +0.9 2,246,274 + +0.2 2,246,356 + Dshi_2116 0.12 -0.5 2,246,356 + Dshi_2116 0.12 -0.1 2,246,375 - Dshi_2116 0.18 +0.4 2,246,378 + Dshi_2116 0.19 -1.0 2,246,419 - Dshi_2116 0.33 +1.3 2,246,465 + Dshi_2116 0.48 -0.6 2,246,473 - Dshi_2116 0.51 -0.6 2,246,473 - Dshi_2116 0.51 -1.7 2,246,505 + Dshi_2116 0.62 -1.2 2,246,513 - Dshi_2116 0.64 +0.7 2,246,517 + Dshi_2116 0.66 -2.3 2,246,517 + Dshi_2116 0.66 -0.1 2,246,525 - Dshi_2116 0.68 -1.7 2,246,539 + Dshi_2116 0.73 +1.4 2,246,695 + -0.2 2,246,738 + +0.6 2,246,738 + +1.6 2,246,738 + +0.8 2,246,746 - -0.2 2,246,746 - -1.3 2,246,771 + Dshi_2117 0.11 +0.3 2,246,780 - Dshi_2117 0.12 -1.0 2,246,813 + Dshi_2117 0.14 +0.4 2,246,860 - Dshi_2117 0.18 -0.7 2,246,975 - Dshi_2117 0.27 -1.0 2,246,975 - Dshi_2117 0.27 +0.2 2,247,110 - Dshi_2117 0.38 +0.8 2,247,130 + Dshi_2117 0.40 -1.1 2,247,155 + Dshi_2117 0.42 +0.5 2,247,207 - Dshi_2117 0.46 -0.6 2,247,317 + Dshi_2117 0.55 +0.0
Or see this region's nucleotide sequence