Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2029 and Dshi_2030 are separated by 160 nucleotides Dshi_2030 and Dshi_2031 are separated by 11 nucleotides Dshi_2031 and Dshi_2032 are separated by 117 nucleotides Dshi_2032 and Dshi_2033 are separated by 12 nucleotides
Dshi_2029: Dshi_2029 - transcriptional regulator, LacI family (RefSeq), at 2,149,164 to 2,150,222
_2029
Dshi_2030: Dshi_2030 - hypothetical protein (RefSeq), at 2,150,383 to 2,150,574
_2030
Dshi_2031: Dshi_2031 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,150,586 to 2,151,734
_2031
Dshi_2032: Dshi_2032 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 2,151,852 to 2,152,367
_2032
Dshi_2033: Dshi_2033 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,152,380 to 2,153,708
_2033
Position (kb)
2150
2151
2152 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2149.619 kb on - strand, within Dshi_2029 at 2149.702 kb on - strand, within Dshi_2029 at 2149.729 kb on + strand, within Dshi_2029 at 2149.743 kb on - strand, within Dshi_2029 at 2149.754 kb on - strand, within Dshi_2029 at 2149.785 kb on - strand, within Dshi_2029 at 2149.820 kb on + strand, within Dshi_2029 at 2149.873 kb on - strand, within Dshi_2029 at 2150.063 kb on + strand, within Dshi_2029 at 2150.176 kb on - strand at 2150.183 kb on - strand at 2150.200 kb on - strand at 2150.276 kb on + strand at 2150.433 kb on + strand, within Dshi_2030 at 2150.479 kb on - strand, within Dshi_2030 at 2150.526 kb on + strand, within Dshi_2030 at 2150.701 kb on - strand, within Dshi_2031 at 2150.701 kb on - strand, within Dshi_2031 at 2150.764 kb on + strand, within Dshi_2031 at 2150.779 kb on + strand, within Dshi_2031 at 2150.790 kb on - strand, within Dshi_2031 at 2150.799 kb on + strand, within Dshi_2031 at 2150.910 kb on + strand, within Dshi_2031 at 2150.925 kb on + strand, within Dshi_2031 at 2150.925 kb on + strand, within Dshi_2031 at 2150.989 kb on + strand, within Dshi_2031 at 2151.069 kb on + strand, within Dshi_2031 at 2151.151 kb on + strand, within Dshi_2031 at 2151.253 kb on + strand, within Dshi_2031 at 2151.313 kb on - strand, within Dshi_2031 at 2151.432 kb on - strand, within Dshi_2031 at 2151.442 kb on - strand, within Dshi_2031 at 2151.446 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.538 kb on + strand, within Dshi_2031 at 2151.582 kb on - strand, within Dshi_2031 at 2151.649 kb on - strand at 2151.666 kb on + strand at 2151.787 kb on - strand at 2151.807 kb on - strand at 2151.807 kb on - strand at 2151.807 kb on - strand at 2151.810 kb on + strand at 2151.838 kb on - strand at 2151.998 kb on - strand, within Dshi_2032 at 2152.010 kb on + strand, within Dshi_2032 at 2152.136 kb on - strand, within Dshi_2032 at 2152.182 kb on + strand, within Dshi_2032 at 2152.208 kb on + strand, within Dshi_2032 at 2152.272 kb on + strand, within Dshi_2032 at 2152.366 kb on - strand at 2152.382 kb on + strand at 2152.532 kb on + strand, within Dshi_2033 at 2152.533 kb on + strand, within Dshi_2033 at 2152.533 kb on + strand, within Dshi_2033 at 2152.541 kb on - strand, within Dshi_2033 at 2152.710 kb on + strand, within Dshi_2033
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 2,149,619 - Dshi_2029 0.43 -0.8 2,149,702 - Dshi_2029 0.51 -1.6 2,149,729 + Dshi_2029 0.53 +0.8 2,149,743 - Dshi_2029 0.55 +0.7 2,149,754 - Dshi_2029 0.56 -2.0 2,149,785 - Dshi_2029 0.59 -2.2 2,149,820 + Dshi_2029 0.62 +1.9 2,149,873 - Dshi_2029 0.67 -0.6 2,150,063 + Dshi_2029 0.85 +0.1 2,150,176 - +0.6 2,150,183 - +0.5 2,150,200 - +0.0 2,150,276 + +1.3 2,150,433 + Dshi_2030 0.26 +0.0 2,150,479 - Dshi_2030 0.50 -3.1 2,150,526 + Dshi_2030 0.74 -1.0 2,150,701 - Dshi_2031 0.10 -4.4 2,150,701 - Dshi_2031 0.10 -0.8 2,150,764 + Dshi_2031 0.15 +1.7 2,150,779 + Dshi_2031 0.17 -0.5 2,150,790 - Dshi_2031 0.18 -0.0 2,150,799 + Dshi_2031 0.19 +1.6 2,150,910 + Dshi_2031 0.28 -0.9 2,150,925 + Dshi_2031 0.30 -1.0 2,150,925 + Dshi_2031 0.30 -3.3 2,150,989 + Dshi_2031 0.35 +0.0 2,151,069 + Dshi_2031 0.42 +0.4 2,151,151 + Dshi_2031 0.49 +0.4 2,151,253 + Dshi_2031 0.58 +0.9 2,151,313 - Dshi_2031 0.63 -0.3 2,151,432 - Dshi_2031 0.74 +0.0 2,151,442 - Dshi_2031 0.74 -1.6 2,151,446 + Dshi_2031 0.75 -1.6 2,151,538 + Dshi_2031 0.83 -1.2 2,151,538 + Dshi_2031 0.83 +0.8 2,151,538 + Dshi_2031 0.83 +0.1 2,151,538 + Dshi_2031 0.83 -0.2 2,151,582 - Dshi_2031 0.87 -0.3 2,151,649 - -0.3 2,151,666 + -0.4 2,151,787 - +0.6 2,151,807 - -0.8 2,151,807 - +0.8 2,151,807 - +0.4 2,151,810 + -0.1 2,151,838 - +0.3 2,151,998 - Dshi_2032 0.28 -0.4 2,152,010 + Dshi_2032 0.31 +0.1 2,152,136 - Dshi_2032 0.55 -2.4 2,152,182 + Dshi_2032 0.64 -3.9 2,152,208 + Dshi_2032 0.69 +0.1 2,152,272 + Dshi_2032 0.81 +1.0 2,152,366 - +0.6 2,152,382 + -0.4 2,152,532 + Dshi_2033 0.11 -1.0 2,152,533 + Dshi_2033 0.12 -2.0 2,152,533 + Dshi_2033 0.12 -0.8 2,152,541 - Dshi_2033 0.12 +1.3 2,152,710 + Dshi_2033 0.25 +0.2
Or see this region's nucleotide sequence