Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1978

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1977 and Dshi_1978 are separated by 16 nucleotidesDshi_1978 and Dshi_1979 overlap by 4 nucleotidesDshi_1979 and Dshi_1980 overlap by 4 nucleotides Dshi_1977: Dshi_1977 - Extracellular ligand-binding receptor (RefSeq), at 2,090,945 to 2,092,207 _1977 Dshi_1978: Dshi_1978 - inner-membrane translocator (RefSeq), at 2,092,224 to 2,093,177 _1978 Dshi_1979: Dshi_1979 - inner-membrane translocator (RefSeq), at 2,093,174 to 2,094,091 _1979 Dshi_1980: Dshi_1980 - ABC transporter related (RefSeq), at 2,094,088 to 2,094,810 _1980 Position (kb) 2092 2093 2094Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2091.305 kb on + strand, within Dshi_1977at 2091.311 kb on - strand, within Dshi_1977at 2091.311 kb on - strand, within Dshi_1977at 2091.321 kb on - strand, within Dshi_1977at 2091.343 kb on - strand, within Dshi_1977at 2091.387 kb on - strand, within Dshi_1977at 2091.569 kb on + strand, within Dshi_1977at 2091.632 kb on - strand, within Dshi_1977at 2091.696 kb on + strand, within Dshi_1977at 2091.778 kb on - strand, within Dshi_1977at 2091.814 kb on + strand, within Dshi_1977at 2091.891 kb on + strand, within Dshi_1977at 2092.012 kb on + strand, within Dshi_1977at 2092.071 kb on + strand, within Dshi_1977at 2092.079 kb on - strand, within Dshi_1977at 2092.128 kb on + strandat 2092.243 kb on + strandat 2092.267 kb on + strandat 2092.274 kb on + strandat 2092.275 kb on - strandat 2092.345 kb on - strand, within Dshi_1978at 2092.379 kb on + strand, within Dshi_1978at 2092.471 kb on + strand, within Dshi_1978at 2092.539 kb on + strand, within Dshi_1978at 2092.792 kb on - strand, within Dshi_1978at 2092.886 kb on + strand, within Dshi_1978at 2092.969 kb on + strand, within Dshi_1978at 2093.094 kb on + strandat 2093.108 kb on - strandat 2093.119 kb on - strandat 2093.200 kb on + strandat 2093.269 kb on - strand, within Dshi_1979at 2093.313 kb on - strand, within Dshi_1979at 2093.323 kb on - strand, within Dshi_1979at 2093.323 kb on - strand, within Dshi_1979at 2093.507 kb on - strand, within Dshi_1979at 2093.576 kb on + strand, within Dshi_1979at 2093.584 kb on - strand, within Dshi_1979at 2093.613 kb on + strand, within Dshi_1979at 2093.639 kb on + strand, within Dshi_1979at 2093.685 kb on + strand, within Dshi_1979at 2093.925 kb on + strand, within Dshi_1979at 2094.030 kb on - strandat 2094.039 kb on + strandat 2094.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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2,091,305 + Dshi_1977 0.29 -0.6
2,091,311 - Dshi_1977 0.29 -0.0
2,091,311 - Dshi_1977 0.29 +0.5
2,091,321 - Dshi_1977 0.30 +0.0
2,091,343 - Dshi_1977 0.32 -3.7
2,091,387 - Dshi_1977 0.35 +0.3
2,091,569 + Dshi_1977 0.49 +0.1
2,091,632 - Dshi_1977 0.54 -1.1
2,091,696 + Dshi_1977 0.59 +0.4
2,091,778 - Dshi_1977 0.66 +0.4
2,091,814 + Dshi_1977 0.69 -0.1
2,091,891 + Dshi_1977 0.75 -1.0
2,092,012 + Dshi_1977 0.84 +0.6
2,092,071 + Dshi_1977 0.89 -0.0
2,092,079 - Dshi_1977 0.90 +0.4
2,092,128 + +0.0
2,092,243 + -1.4
2,092,267 + -0.7
2,092,274 + -1.7
2,092,275 - +0.2
2,092,345 - Dshi_1978 0.13 -1.4
2,092,379 + Dshi_1978 0.16 -1.6
2,092,471 + Dshi_1978 0.26 -0.9
2,092,539 + Dshi_1978 0.33 -0.7
2,092,792 - Dshi_1978 0.60 -0.9
2,092,886 + Dshi_1978 0.69 -0.1
2,092,969 + Dshi_1978 0.78 +0.7
2,093,094 + +2.5
2,093,108 - +0.2
2,093,119 - +0.0
2,093,200 + +0.1
2,093,269 - Dshi_1979 0.10 +0.3
2,093,313 - Dshi_1979 0.15 -1.0
2,093,323 - Dshi_1979 0.16 -0.3
2,093,323 - Dshi_1979 0.16 -1.2
2,093,507 - Dshi_1979 0.36 -1.1
2,093,576 + Dshi_1979 0.44 +0.1
2,093,584 - Dshi_1979 0.45 +1.0
2,093,613 + Dshi_1979 0.48 -0.9
2,093,639 + Dshi_1979 0.51 -3.3
2,093,685 + Dshi_1979 0.56 -1.1
2,093,925 + Dshi_1979 0.82 -0.4
2,094,030 - +1.6
2,094,039 + -0.9
2,094,132 - +0.0

Or see this region's nucleotide sequence