Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1795

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1794 and Dshi_1795 are separated by 193 nucleotidesDshi_1795 and Dshi_1796 are separated by 47 nucleotides Dshi_1794: Dshi_1794 - aminotransferase class I and II (RefSeq), at 1,863,844 to 1,865,025 _1794 Dshi_1795: Dshi_1795 - putative peptidyl-prolyl cis-trans isomerse D (RefSeq), at 1,865,219 to 1,867,063 _1795 Dshi_1796: Dshi_1796 - anthranilate synthase component I (RefSeq), at 1,867,111 to 1,868,640 _1796 Position (kb) 1865 1866 1867 1868Strain fitness (log2 ratio) -3 -2 -1 0 1at 1864.270 kb on - strand, within Dshi_1794at 1864.354 kb on + strand, within Dshi_1794at 1864.402 kb on - strand, within Dshi_1794at 1864.584 kb on + strand, within Dshi_1794at 1864.753 kb on + strand, within Dshi_1794at 1864.767 kb on + strand, within Dshi_1794at 1866.794 kb on - strand, within Dshi_1795

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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1,864,270 - Dshi_1794 0.36 -0.0
1,864,354 + Dshi_1794 0.43 +0.7
1,864,402 - Dshi_1794 0.47 -0.0
1,864,584 + Dshi_1794 0.63 +0.2
1,864,753 + Dshi_1794 0.77 +0.5
1,864,767 + Dshi_1794 0.78 -2.6
1,866,794 - Dshi_1795 0.85 -2.8

Or see this region's nucleotide sequence