Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1789

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1787 and Dshi_1788 overlap by 4 nucleotidesDshi_1788 and Dshi_1789 are separated by 132 nucleotidesDshi_1789 and Dshi_1790 are separated by 104 nucleotidesDshi_1790 and Dshi_1791 are separated by 1 nucleotides Dshi_1787: Dshi_1787 - protein of unknown function DUF192 (RefSeq), at 1,859,391 to 1,859,876 _1787 Dshi_1788: Dshi_1788 - cold-shock DNA-binding domain protein (RefSeq), at 1,859,873 to 1,860,394 _1788 Dshi_1789: Dshi_1789 - Pyridoxal 5'-phosphate synthase (RefSeq), at 1,860,527 to 1,861,132 _1789 Dshi_1790: Dshi_1790 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,861,237 to 1,862,055 _1790 Dshi_1791: Dshi_1791 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,057 to 1,862,668 _1791 Position (kb) 1860 1861 1862Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1860.050 kb on + strand, within Dshi_1788at 1860.086 kb on + strand, within Dshi_1788at 1860.100 kb on - strand, within Dshi_1788at 1860.210 kb on - strand, within Dshi_1788at 1860.313 kb on + strand, within Dshi_1788at 1860.321 kb on - strand, within Dshi_1788at 1860.321 kb on - strand, within Dshi_1788at 1860.321 kb on - strand, within Dshi_1788at 1860.344 kb on + strandat 1860.352 kb on - strandat 1860.354 kb on + strandat 1860.356 kb on + strandat 1860.356 kb on + strandat 1860.378 kb on - strandat 1860.380 kb on - strandat 1860.406 kb on - strandat 1860.420 kb on - strandat 1860.444 kb on + strandat 1860.453 kb on + strandat 1860.453 kb on + strandat 1860.461 kb on - strandat 1860.474 kb on + strandat 1860.486 kb on + strandat 1860.507 kb on + strandat 1861.149 kb on - strandat 1862.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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1,860,050 + Dshi_1788 0.34 -1.1
1,860,086 + Dshi_1788 0.41 -3.5
1,860,100 - Dshi_1788 0.43 -3.2
1,860,210 - Dshi_1788 0.65 -4.6
1,860,313 + Dshi_1788 0.84 -2.6
1,860,321 - Dshi_1788 0.86 -1.6
1,860,321 - Dshi_1788 0.86 -3.7
1,860,321 - Dshi_1788 0.86 -2.3
1,860,344 + -1.6
1,860,352 - -4.1
1,860,354 + -1.6
1,860,356 + -2.6
1,860,356 + -4.5
1,860,378 - -3.6
1,860,380 - -4.0
1,860,406 - -3.8
1,860,420 - -2.8
1,860,444 + -3.2
1,860,453 + -2.7
1,860,453 + -1.6
1,860,461 - -2.6
1,860,474 + -2.6
1,860,486 + -2.3
1,860,507 + -3.7
1,861,149 - -1.7
1,862,064 - +1.3

Or see this region's nucleotide sequence