Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1787 and Dshi_1788 overlap by 4 nucleotides Dshi_1788 and Dshi_1789 are separated by 132 nucleotides Dshi_1789 and Dshi_1790 are separated by 104 nucleotides Dshi_1790 and Dshi_1791 are separated by 1 nucleotides
Dshi_1787: Dshi_1787 - protein of unknown function DUF192 (RefSeq), at 1,859,391 to 1,859,876
_1787
Dshi_1788: Dshi_1788 - cold-shock DNA-binding domain protein (RefSeq), at 1,859,873 to 1,860,394
_1788
Dshi_1789: Dshi_1789 - Pyridoxal 5'-phosphate synthase (RefSeq), at 1,860,527 to 1,861,132
_1789
Dshi_1790: Dshi_1790 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,861,237 to 1,862,055
_1790
Dshi_1791: Dshi_1791 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 1,862,057 to 1,862,668
_1791
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1860.050 kb on + strand, within Dshi_1788 at 1860.086 kb on + strand, within Dshi_1788 at 1860.100 kb on - strand, within Dshi_1788 at 1860.210 kb on - strand, within Dshi_1788 at 1860.313 kb on + strand, within Dshi_1788 at 1860.321 kb on - strand, within Dshi_1788 at 1860.321 kb on - strand, within Dshi_1788 at 1860.321 kb on - strand, within Dshi_1788 at 1860.344 kb on + strand at 1860.352 kb on - strand at 1860.354 kb on + strand at 1860.356 kb on + strand at 1860.356 kb on + strand at 1860.378 kb on - strand at 1860.380 kb on - strand at 1860.406 kb on - strand at 1860.420 kb on - strand at 1860.444 kb on + strand at 1860.453 kb on + strand at 1860.453 kb on + strand at 1860.461 kb on - strand at 1860.474 kb on + strand at 1860.486 kb on + strand at 1860.507 kb on + strand at 1861.149 kb on - strand at 1862.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 1,860,050 + Dshi_1788 0.34 -1.1 1,860,086 + Dshi_1788 0.41 -3.5 1,860,100 - Dshi_1788 0.43 -3.2 1,860,210 - Dshi_1788 0.65 -4.6 1,860,313 + Dshi_1788 0.84 -2.6 1,860,321 - Dshi_1788 0.86 -1.6 1,860,321 - Dshi_1788 0.86 -3.7 1,860,321 - Dshi_1788 0.86 -2.3 1,860,344 + -1.6 1,860,352 - -4.1 1,860,354 + -1.6 1,860,356 + -2.6 1,860,356 + -4.5 1,860,378 - -3.6 1,860,380 - -4.0 1,860,406 - -3.8 1,860,420 - -2.8 1,860,444 + -3.2 1,860,453 + -2.7 1,860,453 + -1.6 1,860,461 - -2.6 1,860,474 + -2.6 1,860,486 + -2.3 1,860,507 + -3.7 1,861,149 - -1.7 1,862,064 - +1.3
Or see this region's nucleotide sequence