Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1786 and Dshi_R0033 are separated by 164 nucleotides Dshi_R0033 and Dshi_1787 are separated by 52 nucleotides Dshi_1787 and Dshi_1788 overlap by 4 nucleotides Dshi_1788 and Dshi_1789 are separated by 132 nucleotides
Dshi_1786: Dshi_1786 - hypothetical protein (RefSeq), at 1,858,657 to 1,859,097
_1786
Dshi_R0033: Dshi_R0033 - tRNA-Pro (RefSeq), at 1,859,262 to 1,859,338
_R0033
Dshi_1787: Dshi_1787 - protein of unknown function DUF192 (RefSeq), at 1,859,391 to 1,859,876
_1787
Dshi_1788: Dshi_1788 - cold-shock DNA-binding domain protein (RefSeq), at 1,859,873 to 1,860,394
_1788
Dshi_1789: Dshi_1789 - Pyridoxal 5'-phosphate synthase (RefSeq), at 1,860,527 to 1,861,132
_1789
Position (kb)
1859
1860 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1858.514 kb on + strand at 1858.536 kb on + strand at 1858.536 kb on + strand at 1858.544 kb on - strand at 1858.624 kb on + strand at 1858.659 kb on + strand at 1858.661 kb on + strand at 1858.661 kb on + strand at 1858.679 kb on - strand at 1858.785 kb on + strand, within Dshi_1786 at 1858.800 kb on + strand, within Dshi_1786 at 1858.813 kb on - strand, within Dshi_1786 at 1858.844 kb on + strand, within Dshi_1786 at 1858.863 kb on - strand, within Dshi_1786 at 1858.883 kb on + strand, within Dshi_1786 at 1858.883 kb on + strand, within Dshi_1786 at 1859.070 kb on + strand at 1859.115 kb on - strand at 1860.050 kb on + strand, within Dshi_1788 at 1860.086 kb on + strand, within Dshi_1788 at 1860.100 kb on - strand, within Dshi_1788 at 1860.210 kb on - strand, within Dshi_1788 at 1860.313 kb on + strand, within Dshi_1788 at 1860.321 kb on - strand, within Dshi_1788 at 1860.321 kb on - strand, within Dshi_1788 at 1860.321 kb on - strand, within Dshi_1788 at 1860.344 kb on + strand at 1860.352 kb on - strand at 1860.354 kb on + strand at 1860.356 kb on + strand at 1860.356 kb on + strand at 1860.378 kb on - strand at 1860.380 kb on - strand at 1860.406 kb on - strand at 1860.420 kb on - strand at 1860.444 kb on + strand at 1860.453 kb on + strand at 1860.453 kb on + strand at 1860.461 kb on - strand at 1860.474 kb on + strand at 1860.486 kb on + strand at 1860.507 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 1,858,514 + -0.0 1,858,536 + -0.0 1,858,536 + -4.1 1,858,544 - -1.4 1,858,624 + -0.3 1,858,659 + -1.4 1,858,661 + -0.3 1,858,661 + -0.2 1,858,679 - -0.8 1,858,785 + Dshi_1786 0.29 -0.3 1,858,800 + Dshi_1786 0.32 -0.2 1,858,813 - Dshi_1786 0.35 +1.2 1,858,844 + Dshi_1786 0.42 -0.0 1,858,863 - Dshi_1786 0.47 -0.2 1,858,883 + Dshi_1786 0.51 -1.5 1,858,883 + Dshi_1786 0.51 +0.2 1,859,070 + -3.6 1,859,115 - +0.6 1,860,050 + Dshi_1788 0.34 -1.1 1,860,086 + Dshi_1788 0.41 -3.5 1,860,100 - Dshi_1788 0.43 -3.2 1,860,210 - Dshi_1788 0.65 -4.6 1,860,313 + Dshi_1788 0.84 -2.6 1,860,321 - Dshi_1788 0.86 -1.6 1,860,321 - Dshi_1788 0.86 -3.7 1,860,321 - Dshi_1788 0.86 -2.3 1,860,344 + -1.6 1,860,352 - -4.1 1,860,354 + -1.6 1,860,356 + -2.6 1,860,356 + -4.5 1,860,378 - -3.6 1,860,380 - -4.0 1,860,406 - -3.8 1,860,420 - -2.8 1,860,444 + -3.2 1,860,453 + -2.7 1,860,453 + -1.6 1,860,461 - -2.6 1,860,474 + -2.6 1,860,486 + -2.3 1,860,507 + -3.7
Or see this region's nucleotide sequence