Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1648

Experiment: m.b. Benzethonium chloride 0.008 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1647 and Dshi_1648 are separated by 274 nucleotidesDshi_1648 and Dshi_1649 are separated by 39 nucleotides Dshi_1647: Dshi_1647 - 2-dehydro-3-deoxyglucarate aldolase (RefSeq), at 1,711,064 to 1,711,846 _1647 Dshi_1648: Dshi_1648 - glucose/maltose/trehalose/sucrose ABC transporter, ATPase component (from data), at 1,712,121 to 1,713,242 _1648 Dshi_1649: Dshi_1649 - alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) (from data), at 1,713,282 to 1,714,940 _1649 Position (kb) 1712 1713 1714Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1711.216 kb on + strand, within Dshi_1647at 1711.353 kb on + strand, within Dshi_1647at 1711.370 kb on + strand, within Dshi_1647at 1711.469 kb on + strand, within Dshi_1647at 1711.499 kb on + strand, within Dshi_1647at 1711.629 kb on + strand, within Dshi_1647at 1711.769 kb on + strandat 1711.850 kb on - strandat 1711.946 kb on - strandat 1711.987 kb on + strandat 1712.079 kb on - strandat 1712.186 kb on + strandat 1712.237 kb on - strand, within Dshi_1648at 1712.266 kb on + strand, within Dshi_1648at 1712.277 kb on + strand, within Dshi_1648at 1712.334 kb on - strand, within Dshi_1648at 1712.379 kb on - strand, within Dshi_1648at 1712.413 kb on + strand, within Dshi_1648at 1712.459 kb on - strand, within Dshi_1648at 1712.476 kb on + strand, within Dshi_1648at 1712.482 kb on + strand, within Dshi_1648at 1712.536 kb on + strand, within Dshi_1648at 1712.580 kb on + strand, within Dshi_1648at 1712.588 kb on - strand, within Dshi_1648at 1712.590 kb on + strand, within Dshi_1648at 1712.598 kb on - strand, within Dshi_1648at 1712.598 kb on - strand, within Dshi_1648at 1712.679 kb on - strand, within Dshi_1648at 1712.791 kb on - strand, within Dshi_1648at 1712.845 kb on + strand, within Dshi_1648at 1712.896 kb on + strand, within Dshi_1648at 1712.898 kb on - strand, within Dshi_1648at 1712.966 kb on - strand, within Dshi_1648at 1712.969 kb on - strand, within Dshi_1648at 1713.021 kb on - strand, within Dshi_1648at 1713.191 kb on - strandat 1713.210 kb on - strandat 1713.210 kb on - strandat 1713.215 kb on - strandat 1713.263 kb on + strandat 1713.289 kb on + strandat 1713.309 kb on - strandat 1713.309 kb on - strandat 1713.349 kb on - strandat 1713.388 kb on + strandat 1713.390 kb on - strandat 1713.519 kb on - strand, within Dshi_1649at 1713.610 kb on - strand, within Dshi_1649at 1713.747 kb on - strand, within Dshi_1649at 1713.812 kb on + strand, within Dshi_1649at 1713.839 kb on - strand, within Dshi_1649at 1713.898 kb on + strand, within Dshi_1649at 1713.952 kb on + strand, within Dshi_1649at 1714.048 kb on - strand, within Dshi_1649at 1714.077 kb on - strand, within Dshi_1649at 1714.098 kb on - strand, within Dshi_1649at 1714.177 kb on - strand, within Dshi_1649at 1714.201 kb on - strand, within Dshi_1649at 1714.228 kb on + strand, within Dshi_1649at 1714.233 kb on + strand, within Dshi_1649

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
remove
1,711,216 + Dshi_1647 0.19 -0.0
1,711,353 + Dshi_1647 0.37 +1.2
1,711,370 + Dshi_1647 0.39 -1.3
1,711,469 + Dshi_1647 0.52 +0.1
1,711,499 + Dshi_1647 0.56 -2.8
1,711,629 + Dshi_1647 0.72 +0.6
1,711,769 + +0.9
1,711,850 - +0.2
1,711,946 - +0.2
1,711,987 + +0.3
1,712,079 - +2.3
1,712,186 + +2.9
1,712,237 - Dshi_1648 0.10 +2.5
1,712,266 + Dshi_1648 0.13 +1.9
1,712,277 + Dshi_1648 0.14 +2.0
1,712,334 - Dshi_1648 0.19 +1.5
1,712,379 - Dshi_1648 0.23 +3.1
1,712,413 + Dshi_1648 0.26 +1.9
1,712,459 - Dshi_1648 0.30 +1.8
1,712,476 + Dshi_1648 0.32 +1.1
1,712,482 + Dshi_1648 0.32 +1.0
1,712,536 + Dshi_1648 0.37 +2.4
1,712,580 + Dshi_1648 0.41 +2.9
1,712,588 - Dshi_1648 0.42 +3.2
1,712,590 + Dshi_1648 0.42 +1.7
1,712,598 - Dshi_1648 0.43 -1.0
1,712,598 - Dshi_1648 0.43 +2.4
1,712,679 - Dshi_1648 0.50 +1.3
1,712,791 - Dshi_1648 0.60 +2.1
1,712,845 + Dshi_1648 0.65 +2.2
1,712,896 + Dshi_1648 0.69 +1.8
1,712,898 - Dshi_1648 0.69 +2.4
1,712,966 - Dshi_1648 0.75 +1.9
1,712,969 - Dshi_1648 0.76 +2.6
1,713,021 - Dshi_1648 0.80 +2.2
1,713,191 - +1.4
1,713,210 - +1.9
1,713,210 - +2.1
1,713,215 - +2.4
1,713,263 + +3.1
1,713,289 + +1.7
1,713,309 - +3.3
1,713,309 - +2.0
1,713,349 - +1.6
1,713,388 + -1.6
1,713,390 - +1.7
1,713,519 - Dshi_1649 0.14 +1.6
1,713,610 - Dshi_1649 0.20 +2.2
1,713,747 - Dshi_1649 0.28 +2.6
1,713,812 + Dshi_1649 0.32 +0.6
1,713,839 - Dshi_1649 0.34 +3.7
1,713,898 + Dshi_1649 0.37 -3.3
1,713,952 + Dshi_1649 0.40 +1.3
1,714,048 - Dshi_1649 0.46 +2.5
1,714,077 - Dshi_1649 0.48 +2.2
1,714,098 - Dshi_1649 0.49 +1.0
1,714,177 - Dshi_1649 0.54 -0.0
1,714,201 - Dshi_1649 0.55 +1.8
1,714,228 + Dshi_1649 0.57 +2.5
1,714,233 + Dshi_1649 0.57 +1.7

Or see this region's nucleotide sequence