Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1135

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1133 and Dshi_1134 are separated by 90 nucleotidesDshi_1134 and Dshi_1135 are separated by 26 nucleotidesDshi_1135 and Dshi_1136 are separated by 17 nucleotidesDshi_1136 and Dshi_1137 are separated by 99 nucleotides Dshi_1133: Dshi_1133 - Lytic transglycosylase catalytic (RefSeq), at 1,158,693 to 1,159,541 _1133 Dshi_1134: Dshi_1134 - 3-oxoacid CoA-transferase, B subunit (RefSeq), at 1,159,632 to 1,160,258 _1134 Dshi_1135: Dshi_1135 - putative signal transduction histidine kinase (RefSeq), at 1,160,285 to 1,161,301 _1135 Dshi_1136: Dshi_1136 - 3-oxoacid CoA-transferase, A subunit (RefSeq), at 1,161,319 to 1,162,014 _1136 Dshi_1137: Dshi_1137 - DNA topoisomerase I (RefSeq), at 1,162,114 to 1,164,816 _1137 Position (kb) 1160 1161 1162Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1159.438 kb on - strand, within Dshi_1133at 1160.078 kb on + strand, within Dshi_1134at 1160.104 kb on - strand, within Dshi_1134at 1160.214 kb on + strandat 1160.222 kb on - strandat 1160.251 kb on + strandat 1160.361 kb on - strandat 1160.397 kb on - strand, within Dshi_1135at 1160.415 kb on + strand, within Dshi_1135at 1160.415 kb on + strand, within Dshi_1135at 1160.420 kb on + strand, within Dshi_1135at 1160.423 kb on - strand, within Dshi_1135at 1160.466 kb on - strand, within Dshi_1135at 1160.477 kb on - strand, within Dshi_1135at 1160.477 kb on - strand, within Dshi_1135at 1160.551 kb on - strand, within Dshi_1135at 1160.603 kb on - strand, within Dshi_1135at 1160.667 kb on + strand, within Dshi_1135at 1160.768 kb on + strand, within Dshi_1135at 1160.871 kb on - strand, within Dshi_1135at 1160.893 kb on + strand, within Dshi_1135at 1160.893 kb on + strand, within Dshi_1135at 1160.901 kb on - strand, within Dshi_1135at 1160.901 kb on - strand, within Dshi_1135at 1160.975 kb on - strand, within Dshi_1135at 1161.153 kb on - strand, within Dshi_1135at 1161.332 kb on + strandat 1161.377 kb on - strandat 1161.384 kb on + strandat 1161.472 kb on - strand, within Dshi_1136at 1161.512 kb on + strand, within Dshi_1136at 1161.695 kb on + strand, within Dshi_1136at 1161.737 kb on - strand, within Dshi_1136at 1161.868 kb on + strand, within Dshi_1136at 1161.889 kb on + strand, within Dshi_1136at 1161.930 kb on + strand, within Dshi_1136at 1161.974 kb on + strandat 1161.993 kb on - strandat 1162.045 kb on - strandat 1162.050 kb on - strandat 1162.050 kb on - strandat 1162.235 kb on - strandat 1162.235 kb on - strandat 1162.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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1,159,438 - Dshi_1133 0.88 +1.1
1,160,078 + Dshi_1134 0.71 -0.6
1,160,104 - Dshi_1134 0.75 -2.3
1,160,214 + -0.5
1,160,222 - -1.2
1,160,251 + +1.4
1,160,361 - +2.3
1,160,397 - Dshi_1135 0.11 +1.8
1,160,415 + Dshi_1135 0.13 +0.3
1,160,415 + Dshi_1135 0.13 +1.9
1,160,420 + Dshi_1135 0.13 +1.8
1,160,423 - Dshi_1135 0.14 +0.5
1,160,466 - Dshi_1135 0.18 +1.6
1,160,477 - Dshi_1135 0.19 +2.0
1,160,477 - Dshi_1135 0.19 +2.6
1,160,551 - Dshi_1135 0.26 -1.4
1,160,603 - Dshi_1135 0.31 +2.0
1,160,667 + Dshi_1135 0.38 +1.6
1,160,768 + Dshi_1135 0.47 +2.8
1,160,871 - Dshi_1135 0.58 +1.5
1,160,893 + Dshi_1135 0.60 -1.5
1,160,893 + Dshi_1135 0.60 +1.1
1,160,901 - Dshi_1135 0.61 -3.4
1,160,901 - Dshi_1135 0.61 +0.3
1,160,975 - Dshi_1135 0.68 +1.7
1,161,153 - Dshi_1135 0.85 -1.6
1,161,332 + +1.1
1,161,377 - +1.6
1,161,384 + +0.6
1,161,472 - Dshi_1136 0.22 +3.0
1,161,512 + Dshi_1136 0.28 +1.8
1,161,695 + Dshi_1136 0.54 +1.4
1,161,737 - Dshi_1136 0.60 +1.7
1,161,868 + Dshi_1136 0.79 +1.0
1,161,889 + Dshi_1136 0.82 +1.9
1,161,930 + Dshi_1136 0.88 +0.2
1,161,974 + -0.1
1,161,993 - +1.2
1,162,045 - +1.6
1,162,050 - +3.2
1,162,050 - +1.0
1,162,235 - -4.0
1,162,235 - -0.9
1,162,265 - -2.5

Or see this region's nucleotide sequence