Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1047

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1046 and Dshi_1047 overlap by 4 nucleotidesDshi_1047 and Dshi_1048 are separated by 1 nucleotidesDshi_1048 and Dshi_1049 overlap by 4 nucleotides Dshi_1046: Dshi_1046 - Amidase (RefSeq), at 1,079,893 to 1,081,023 _1046 Dshi_1047: Dshi_1047 - hypothetical protein (RefSeq), at 1,081,020 to 1,081,880 _1047 Dshi_1048: Dshi_1048 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,081,882 to 1,082,679 _1048 Dshi_1049: Dshi_1049 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,082,676 to 1,083,461 _1049 Position (kb) 1081 1082Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1080.076 kb on - strand, within Dshi_1046at 1080.286 kb on + strand, within Dshi_1046at 1080.383 kb on + strand, within Dshi_1046at 1080.421 kb on - strand, within Dshi_1046at 1080.531 kb on - strand, within Dshi_1046at 1080.656 kb on - strand, within Dshi_1046at 1080.895 kb on + strand, within Dshi_1046at 1080.936 kb on + strandat 1080.946 kb on + strandat 1080.965 kb on - strandat 1081.239 kb on - strand, within Dshi_1047at 1081.244 kb on + strand, within Dshi_1047at 1081.252 kb on - strand, within Dshi_1047at 1081.254 kb on + strand, within Dshi_1047at 1081.262 kb on - strand, within Dshi_1047at 1081.269 kb on + strand, within Dshi_1047at 1081.269 kb on + strand, within Dshi_1047at 1081.345 kb on + strand, within Dshi_1047at 1081.348 kb on - strand, within Dshi_1047at 1081.358 kb on - strand, within Dshi_1047at 1081.454 kb on + strand, within Dshi_1047at 1081.454 kb on + strand, within Dshi_1047at 1081.458 kb on - strand, within Dshi_1047at 1081.462 kb on - strand, within Dshi_1047at 1081.564 kb on - strand, within Dshi_1047at 1081.658 kb on + strand, within Dshi_1047at 1081.658 kb on + strand, within Dshi_1047at 1081.663 kb on + strand, within Dshi_1047at 1081.782 kb on - strand, within Dshi_1047at 1081.960 kb on + strandat 1082.055 kb on - strand, within Dshi_1048at 1082.182 kb on - strand, within Dshi_1048at 1082.424 kb on - strand, within Dshi_1048at 1082.424 kb on - strand, within Dshi_1048at 1082.608 kb on + strandat 1082.672 kb on + strandat 1082.769 kb on - strand, within Dshi_1049at 1082.836 kb on - strand, within Dshi_1049at 1082.860 kb on + strand, within Dshi_1049at 1082.872 kb on + strand, within Dshi_1049at 1082.874 kb on - strand, within Dshi_1049

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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1,080,076 - Dshi_1046 0.16 +1.3
1,080,286 + Dshi_1046 0.35 +1.3
1,080,383 + Dshi_1046 0.43 +0.0
1,080,421 - Dshi_1046 0.47 +1.9
1,080,531 - Dshi_1046 0.56 +0.8
1,080,656 - Dshi_1046 0.67 -0.8
1,080,895 + Dshi_1046 0.89 -0.3
1,080,936 + -1.6
1,080,946 + -0.3
1,080,965 - -0.6
1,081,239 - Dshi_1047 0.25 -2.3
1,081,244 + Dshi_1047 0.26 +2.0
1,081,252 - Dshi_1047 0.27 +0.3
1,081,254 + Dshi_1047 0.27 -1.6
1,081,262 - Dshi_1047 0.28 -2.3
1,081,269 + Dshi_1047 0.29 -1.0
1,081,269 + Dshi_1047 0.29 -1.2
1,081,345 + Dshi_1047 0.38 -0.4
1,081,348 - Dshi_1047 0.38 -1.9
1,081,358 - Dshi_1047 0.39 -0.2
1,081,454 + Dshi_1047 0.50 +0.0
1,081,454 + Dshi_1047 0.50 -0.4
1,081,458 - Dshi_1047 0.51 -0.7
1,081,462 - Dshi_1047 0.51 +0.0
1,081,564 - Dshi_1047 0.63 +0.6
1,081,658 + Dshi_1047 0.74 +0.4
1,081,658 + Dshi_1047 0.74 +0.5
1,081,663 + Dshi_1047 0.75 -0.4
1,081,782 - Dshi_1047 0.89 -1.3
1,081,960 + +0.0
1,082,055 - Dshi_1048 0.22 +1.7
1,082,182 - Dshi_1048 0.38 +1.8
1,082,424 - Dshi_1048 0.68 -0.2
1,082,424 - Dshi_1048 0.68 -1.3
1,082,608 + -0.5
1,082,672 + -0.1
1,082,769 - Dshi_1049 0.12 -3.1
1,082,836 - Dshi_1049 0.20 -0.2
1,082,860 + Dshi_1049 0.23 -0.2
1,082,872 + Dshi_1049 0.25 +1.0
1,082,874 - Dshi_1049 0.25 +0.1

Or see this region's nucleotide sequence