Experiment: m.b. Benzethonium chloride 0.008 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0644 and Dshi_0645 are separated by 99 nucleotides Dshi_0645 and Dshi_0646 are separated by 58 nucleotides
Dshi_0644: Dshi_0644 - excinuclease ABC, C subunit (RefSeq), at 642,411 to 644,306
_0644
Dshi_0645: Dshi_0645 - TRAP transporter solute receptor, TAXI family (RefSeq), at 644,406 to 645,413
_0645
Dshi_0646: Dshi_0646 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 645,472 to 647,574
_0646
Position (kb) 644
645
646 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 643.657 kb on + strand, within Dshi_0644 at 643.657 kb on + strand, within Dshi_0644 at 643.756 kb on + strand, within Dshi_0644 at 643.963 kb on - strand, within Dshi_0644 at 644.020 kb on - strand, within Dshi_0644 at 644.178 kb on + strand at 644.375 kb on + strand at 644.377 kb on + strand at 644.420 kb on - strand at 644.425 kb on - strand at 644.458 kb on - strand at 644.552 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.563 kb on + strand, within Dshi_0645 at 644.571 kb on - strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.654 kb on + strand, within Dshi_0645 at 644.856 kb on + strand, within Dshi_0645 at 644.964 kb on - strand, within Dshi_0645 at 645.068 kb on + strand, within Dshi_0645 at 645.106 kb on - strand, within Dshi_0645 at 645.170 kb on + strand, within Dshi_0645 at 645.208 kb on + strand, within Dshi_0645 at 645.406 kb on - strand at 645.406 kb on - strand at 645.657 kb on - strand at 645.662 kb on - strand at 645.708 kb on - strand, within Dshi_0646 at 645.844 kb on - strand, within Dshi_0646 at 645.878 kb on - strand, within Dshi_0646 at 645.909 kb on + strand, within Dshi_0646 at 645.911 kb on - strand, within Dshi_0646 at 646.026 kb on - strand, within Dshi_0646 at 646.154 kb on + strand, within Dshi_0646 at 646.185 kb on + strand, within Dshi_0646 at 646.185 kb on + strand, within Dshi_0646
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM remove 643,657 + Dshi_0644 0.66 +0.6 643,657 + Dshi_0644 0.66 +1.4 643,756 + Dshi_0644 0.71 -0.3 643,963 - Dshi_0644 0.82 +0.2 644,020 - Dshi_0644 0.85 -2.6 644,178 + -0.0 644,375 + -0.0 644,377 + -0.4 644,420 - +0.6 644,425 - +2.0 644,458 - +1.6 644,552 + Dshi_0645 0.14 +1.2 644,563 + Dshi_0645 0.16 +0.8 644,563 + Dshi_0645 0.16 +0.9 644,571 - Dshi_0645 0.16 -0.6 644,654 + Dshi_0645 0.25 +0.8 644,654 + Dshi_0645 0.25 +1.1 644,856 + Dshi_0645 0.45 +1.7 644,964 - Dshi_0645 0.55 +1.2 645,068 + Dshi_0645 0.66 +0.4 645,106 - Dshi_0645 0.69 +1.2 645,170 + Dshi_0645 0.76 -0.4 645,208 + Dshi_0645 0.80 -1.0 645,406 - +1.2 645,406 - +0.6 645,657 - -0.1 645,662 - -1.0 645,708 - Dshi_0646 0.11 -0.1 645,844 - Dshi_0646 0.18 -2.6 645,878 - Dshi_0646 0.19 -0.5 645,909 + Dshi_0646 0.21 -2.8 645,911 - Dshi_0646 0.21 +1.0 646,026 - Dshi_0646 0.26 -0.4 646,154 + Dshi_0646 0.32 +1.3 646,185 + Dshi_0646 0.34 +0.8 646,185 + Dshi_0646 0.34 +1.2
Or see this region's nucleotide sequence