Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0636

Experiment: m.b. Benzethonium chloride 0.008 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0635 and Dshi_0636 are separated by 198 nucleotidesDshi_0636 and Dshi_0637 overlap by 4 nucleotides Dshi_0635: Dshi_0635 - cyclic nucleotide-binding (RefSeq), at 633,409 to 635,610 _0635 Dshi_0636: Dshi_0636 - phospholipase/Carboxylesterase (RefSeq), at 635,809 to 636,474 _0636 Dshi_0637: Dshi_0637 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 636,471 to 637,394 _0637 Position (kb) 635 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1at 634.937 kb on + strand, within Dshi_0635at 635.110 kb on - strand, within Dshi_0635at 635.121 kb on - strand, within Dshi_0635at 635.141 kb on - strand, within Dshi_0635at 635.298 kb on + strand, within Dshi_0635at 635.378 kb on - strand, within Dshi_0635at 635.518 kb on - strandat 635.625 kb on - strandat 635.637 kb on + strandat 635.687 kb on + strandat 635.785 kb on + strandat 635.849 kb on - strandat 635.860 kb on + strandat 635.948 kb on - strand, within Dshi_0636at 635.967 kb on - strand, within Dshi_0636at 636.014 kb on - strand, within Dshi_0636at 636.019 kb on + strand, within Dshi_0636at 636.130 kb on - strand, within Dshi_0636at 636.258 kb on + strand, within Dshi_0636at 636.324 kb on + strand, within Dshi_0636at 636.355 kb on + strand, within Dshi_0636at 636.637 kb on - strand, within Dshi_0637at 636.683 kb on - strand, within Dshi_0637at 636.777 kb on - strand, within Dshi_0637at 636.892 kb on + strand, within Dshi_0637at 636.909 kb on + strand, within Dshi_0637at 636.952 kb on - strand, within Dshi_0637at 637.010 kb on - strand, within Dshi_0637at 637.037 kb on + strand, within Dshi_0637at 637.163 kb on - strand, within Dshi_0637at 637.184 kb on - strand, within Dshi_0637at 637.206 kb on + strand, within Dshi_0637at 637.223 kb on + strand, within Dshi_0637at 637.250 kb on + strand, within Dshi_0637at 637.258 kb on + strand, within Dshi_0637at 637.301 kb on + strand, within Dshi_0637at 637.309 kb on - strandat 637.410 kb on - strandat 637.450 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
remove
634,937 + Dshi_0635 0.69 -0.7
635,110 - Dshi_0635 0.77 -0.4
635,121 - Dshi_0635 0.78 -0.4
635,141 - Dshi_0635 0.79 +0.6
635,298 + Dshi_0635 0.86 +0.3
635,378 - Dshi_0635 0.89 -0.7
635,518 - +0.4
635,625 - -1.6
635,637 + +0.4
635,687 + -3.7
635,785 + -0.6
635,849 - -0.7
635,860 + -1.9
635,948 - Dshi_0636 0.21 +0.2
635,967 - Dshi_0636 0.24 +0.7
636,014 - Dshi_0636 0.31 -0.2
636,019 + Dshi_0636 0.32 +0.1
636,130 - Dshi_0636 0.48 -0.7
636,258 + Dshi_0636 0.67 -0.2
636,324 + Dshi_0636 0.77 -0.7
636,355 + Dshi_0636 0.82 -0.5
636,637 - Dshi_0637 0.18 -0.7
636,683 - Dshi_0637 0.23 +0.6
636,777 - Dshi_0637 0.33 -0.0
636,892 + Dshi_0637 0.46 -0.0
636,909 + Dshi_0637 0.47 -1.0
636,952 - Dshi_0637 0.52 -2.3
637,010 - Dshi_0637 0.58 +0.1
637,037 + Dshi_0637 0.61 -2.8
637,163 - Dshi_0637 0.75 -1.6
637,184 - Dshi_0637 0.77 -1.0
637,206 + Dshi_0637 0.80 +1.1
637,223 + Dshi_0637 0.81 +1.5
637,250 + Dshi_0637 0.84 -1.8
637,258 + Dshi_0637 0.85 -0.6
637,301 + Dshi_0637 0.90 -1.7
637,309 - -0.3
637,410 - -0.9
637,450 + -0.5

Or see this region's nucleotide sequence