Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0141

Experiment: m.b. Benzethonium chloride 0.008 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0139 and Dshi_0140 are separated by 172 nucleotidesDshi_0140 and Dshi_0141 overlap by 11 nucleotidesDshi_0141 and Dshi_0142 are separated by 163 nucleotides Dshi_0139: Dshi_0139 - type I secretion system ATPase (RefSeq), at 137,186 to 138,925 _0139 Dshi_0140: Dshi_0140 - VacJ family lipoprotein (RefSeq), at 139,098 to 139,919 _0140 Dshi_0141: Dshi_0141 - toluene tolerance family protein (RefSeq), at 139,909 to 140,529 _0141 Dshi_0142: Dshi_0142 - penicillin-binding protein, 1A family (RefSeq), at 140,693 to 142,882 _0142 Position (kb) 139 140 141Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 138.932 kb on + strandat 138.947 kb on + strandat 138.966 kb on + strandat 139.048 kb on - strandat 139.048 kb on - strandat 139.058 kb on - strandat 139.064 kb on - strandat 139.070 kb on + strandat 139.070 kb on + strandat 139.078 kb on - strandat 139.128 kb on - strandat 139.130 kb on - strandat 139.137 kb on - strandat 139.149 kb on + strandat 139.157 kb on - strandat 139.195 kb on + strand, within Dshi_0140at 139.249 kb on - strand, within Dshi_0140at 139.308 kb on + strand, within Dshi_0140at 139.330 kb on + strand, within Dshi_0140at 139.330 kb on + strand, within Dshi_0140at 139.357 kb on + strand, within Dshi_0140at 139.365 kb on - strand, within Dshi_0140at 139.464 kb on + strand, within Dshi_0140at 139.682 kb on - strand, within Dshi_0140at 139.682 kb on - strand, within Dshi_0140at 139.709 kb on - strandat 139.843 kb on + strandat 139.851 kb on - strandat 139.880 kb on + strandat 139.885 kb on + strandat 139.976 kb on + strand, within Dshi_0141at 139.984 kb on - strand, within Dshi_0141at 139.994 kb on - strand, within Dshi_0141at 139.994 kb on - strand, within Dshi_0141at 140.210 kb on + strand, within Dshi_0141at 140.251 kb on - strand, within Dshi_0141at 140.255 kb on + strand, within Dshi_0141at 140.433 kb on - strand, within Dshi_0141at 140.546 kb on - strandat 140.691 kb on + strandat 140.834 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.008 mM
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138,932 + -0.6
138,947 + -1.9
138,966 + -3.3
139,048 - -0.6
139,048 - -4.7
139,058 - -4.2
139,064 - -3.6
139,070 + -3.3
139,070 + -3.3
139,078 - -2.6
139,128 - -3.8
139,130 - -5.0
139,137 - -2.6
139,149 + -4.3
139,157 - -3.3
139,195 + Dshi_0140 0.12 -3.2
139,249 - Dshi_0140 0.18 -2.8
139,308 + Dshi_0140 0.26 -4.6
139,330 + Dshi_0140 0.28 -3.0
139,330 + Dshi_0140 0.28 -3.3
139,357 + Dshi_0140 0.32 -6.3
139,365 - Dshi_0140 0.32 -3.0
139,464 + Dshi_0140 0.45 -5.5
139,682 - Dshi_0140 0.71 -1.3
139,682 - Dshi_0140 0.71 -2.8
139,709 - -2.0
139,843 + -4.9
139,851 - -2.8
139,880 + -1.0
139,885 + -4.3
139,976 + Dshi_0141 0.11 -4.2
139,984 - Dshi_0141 0.12 -6.0
139,994 - Dshi_0141 0.14 -3.6
139,994 - Dshi_0141 0.14 -3.2
140,210 + Dshi_0141 0.48 -2.0
140,251 - Dshi_0141 0.55 -2.9
140,255 + Dshi_0141 0.56 -5.6
140,433 - Dshi_0141 0.84 -1.6
140,546 - -0.3
140,691 + -0.0
140,834 - -1.0

Or see this region's nucleotide sequence