Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0655

Experiment: SMN_rich_anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0653 and Rru_A0654 are separated by 47 nucleotidesRru_A0654 and Rru_A0655 are separated by 135 nucleotidesRru_A0655 and Rru_A0656 are separated by 33 nucleotides Rru_A0653: Rru_A0653 - hypothetical protein (NCBI), at 773,723 to 774,301 _A0653 Rru_A0654: Rru_A0654 - Multiple antibiotic resistance (MarC)-related proteins (NCBI), at 774,349 to 775,002 _A0654 Rru_A0655: Rru_A0655 - Transcriptional Regulator, AsnC family (NCBI), at 775,138 to 775,728 _A0655 Rru_A0656: Rru_A0656 - delta-1-pyrroline-5-carboxylate dehydrogenase 3 (NCBI), at 775,762 to 779,472 _A0656 Position (kb) 775 776Strain fitness (log2 ratio) -1 0 1at 774.496 kb on - strand, within Rru_A0654at 774.497 kb on + strand, within Rru_A0654at 774.498 kb on - strand, within Rru_A0654at 774.498 kb on - strand, within Rru_A0654at 774.498 kb on - strand, within Rru_A0654at 774.498 kb on - strand, within Rru_A0654at 774.581 kb on + strand, within Rru_A0654at 774.581 kb on + strand, within Rru_A0654at 774.581 kb on + strand, within Rru_A0654at 774.845 kb on + strand, within Rru_A0654at 774.846 kb on - strand, within Rru_A0654at 774.846 kb on - strand, within Rru_A0654at 774.846 kb on - strand, within Rru_A0654at 775.048 kb on + strandat 775.048 kb on + strandat 775.190 kb on + strandat 775.191 kb on - strandat 775.191 kb on - strandat 775.191 kb on - strandat 775.191 kb on - strandat 775.191 kb on - strandat 775.195 kb on - strandat 775.286 kb on + strand, within Rru_A0655at 775.287 kb on - strand, within Rru_A0655at 775.287 kb on - strand, within Rru_A0655at 775.287 kb on - strand, within Rru_A0655at 775.637 kb on + strand, within Rru_A0655at 775.639 kb on + strand, within Rru_A0655at 776.011 kb on + strandat 776.011 kb on + strandat 776.012 kb on - strandat 776.178 kb on + strand, within Rru_A0656at 776.178 kb on + strand, within Rru_A0656at 776.339 kb on - strand, within Rru_A0656at 776.339 kb on - strand, within Rru_A0656at 776.340 kb on + strand, within Rru_A0656at 776.340 kb on + strand, within Rru_A0656at 776.340 kb on + strand, within Rru_A0656at 776.340 kb on + strand, within Rru_A0656at 776.341 kb on - strand, within Rru_A0656at 776.341 kb on - strand, within Rru_A0656at 776.341 kb on - strand, within Rru_A0656at 776.341 kb on - strand, within Rru_A0656at 776.344 kb on + strand, within Rru_A0656at 776.344 kb on + strand, within Rru_A0656at 776.344 kb on + strand, within Rru_A0656at 776.345 kb on - strand, within Rru_A0656at 776.410 kb on + strand, within Rru_A0656at 776.411 kb on - strand, within Rru_A0656at 776.700 kb on + strand, within Rru_A0656at 776.717 kb on - strand, within Rru_A0656

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_anaerobic
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774,496 - Rru_A0654 0.22 +1.2
774,497 + Rru_A0654 0.23 +0.2
774,498 - Rru_A0654 0.23 +0.4
774,498 - Rru_A0654 0.23 +0.3
774,498 - Rru_A0654 0.23 -0.1
774,498 - Rru_A0654 0.23 +0.4
774,581 + Rru_A0654 0.35 +0.6
774,581 + Rru_A0654 0.35 -0.2
774,581 + Rru_A0654 0.35 -0.5
774,845 + Rru_A0654 0.76 +0.1
774,846 - Rru_A0654 0.76 +0.2
774,846 - Rru_A0654 0.76 +0.0
774,846 - Rru_A0654 0.76 -0.0
775,048 + +0.2
775,048 + +0.8
775,190 + +0.2
775,191 - -0.7
775,191 - -0.8
775,191 - +1.4
775,191 - -1.5
775,191 - -0.3
775,195 - -0.2
775,286 + Rru_A0655 0.25 -0.2
775,287 - Rru_A0655 0.25 -0.7
775,287 - Rru_A0655 0.25 -0.6
775,287 - Rru_A0655 0.25 -0.6
775,637 + Rru_A0655 0.84 -0.4
775,639 + Rru_A0655 0.85 -0.3
776,011 + -0.2
776,011 + -0.1
776,012 - -0.9
776,178 + Rru_A0656 0.11 -0.7
776,178 + Rru_A0656 0.11 -0.1
776,339 - Rru_A0656 0.16 -0.4
776,339 - Rru_A0656 0.16 -0.2
776,340 + Rru_A0656 0.16 -0.2
776,340 + Rru_A0656 0.16 +0.0
776,340 + Rru_A0656 0.16 -0.2
776,340 + Rru_A0656 0.16 +0.0
776,341 - Rru_A0656 0.16 -0.0
776,341 - Rru_A0656 0.16 +0.4
776,341 - Rru_A0656 0.16 -0.4
776,341 - Rru_A0656 0.16 -0.3
776,344 + Rru_A0656 0.16 -0.5
776,344 + Rru_A0656 0.16 -0.1
776,344 + Rru_A0656 0.16 +0.4
776,345 - Rru_A0656 0.16 -0.2
776,410 + Rru_A0656 0.17 -0.2
776,411 - Rru_A0656 0.17 -0.2
776,700 + Rru_A0656 0.25 -0.1
776,717 - Rru_A0656 0.26 +0.2

Or see this region's nucleotide sequence