Experiment: SMN_rich_anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0574 and Rru_A0575 are separated by 123 nucleotides Rru_A0575 and Rru_A0576 are separated by 111 nucleotides
Rru_A0574: Rru_A0574 - Carboxylyase-related protein (NCBI), at 680,792 to 682,315
_A0574
Rru_A0575: Rru_A0575 - Peptidase U62, modulator of DNA gyrase (NCBI), at 682,439 to 683,797
_A0575
Rru_A0576: Rru_A0576 - chemotaxis sensory transducer (NCBI), at 683,909 to 685,975
_A0576
Position (kb) 682
683
684 Strain fitness (log2 ratio) -1
0
1 at 681.698 kb on + strand, within Rru_A0574 at 681.899 kb on - strand, within Rru_A0574 at 682.313 kb on + strand at 682.313 kb on + strand at 682.314 kb on - strand at 682.314 kb on - strand at 682.332 kb on - strand at 682.332 kb on - strand at 682.332 kb on - strand at 682.369 kb on + strand at 682.369 kb on + strand at 682.369 kb on + strand at 682.369 kb on + strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.370 kb on - strand at 682.373 kb on + strand at 682.374 kb on - strand at 682.374 kb on - strand at 682.962 kb on - strand, within Rru_A0575 at 683.034 kb on - strand, within Rru_A0575 at 683.034 kb on - strand, within Rru_A0575 at 683.561 kb on + strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.562 kb on - strand, within Rru_A0575 at 683.609 kb on + strand, within Rru_A0575 at 683.833 kb on - strand at 683.833 kb on - strand at 683.866 kb on + strand at 684.306 kb on - strand, within Rru_A0576 at 684.384 kb on - strand, within Rru_A0576 at 684.428 kb on + strand, within Rru_A0576 at 684.428 kb on + strand, within Rru_A0576 at 684.429 kb on - strand, within Rru_A0576
Per-strain Table
Position Strand Gene LocusTag Fraction SMN_rich_anaerobic remove 681,698 + Rru_A0574 0.59 -0.6 681,899 - Rru_A0574 0.73 -1.4 682,313 + -0.2 682,313 + +0.4 682,314 - +0.4 682,314 - -0.1 682,332 - +0.0 682,332 - -0.3 682,332 - -0.1 682,369 + +0.7 682,369 + -0.1 682,369 + +0.3 682,369 + +0.2 682,370 - +0.4 682,370 - -0.3 682,370 - -0.2 682,370 - -0.6 682,370 - +0.1 682,370 - +0.1 682,373 + +0.4 682,374 - +1.2 682,374 - -0.7 682,962 - Rru_A0575 0.38 -0.2 683,034 - Rru_A0575 0.44 -0.8 683,034 - Rru_A0575 0.44 -0.1 683,561 + Rru_A0575 0.83 -0.0 683,562 - Rru_A0575 0.83 +0.4 683,562 - Rru_A0575 0.83 -0.5 683,562 - Rru_A0575 0.83 +0.4 683,562 - Rru_A0575 0.83 -0.8 683,562 - Rru_A0575 0.83 -0.6 683,562 - Rru_A0575 0.83 -0.5 683,562 - Rru_A0575 0.83 -0.3 683,562 - Rru_A0575 0.83 -0.0 683,562 - Rru_A0575 0.83 +0.4 683,562 - Rru_A0575 0.83 -1.5 683,609 + Rru_A0575 0.86 -0.5 683,833 - +0.4 683,833 - +0.3 683,866 + -0.3 684,306 - Rru_A0576 0.19 -0.3 684,384 - Rru_A0576 0.23 +0.2 684,428 + Rru_A0576 0.25 +0.5 684,428 + Rru_A0576 0.25 +0.6 684,429 - Rru_A0576 0.25 -0.3
Or see this region's nucleotide sequence