Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0536

Experiment: SMN_rich_anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0535 and Rru_A0536 are separated by 135 nucleotidesRru_A0536 and Rru_A0537 are separated by 130 nucleotides Rru_A0535: Rru_A0535 - Protein of unknown function DUF6, transmembrane (NCBI), at 630,068 to 630,982 _A0535 Rru_A0536: Rru_A0536 - Transcriptional Regulator, AraC family (NCBI), at 631,118 to 632,032 _A0536 Rru_A0537: Rru_A0537 - Protein of unknown function DUF955 (NCBI), at 632,163 to 633,422 _A0537 Position (kb) 631 632 633Strain fitness (log2 ratio) -2 -1 0 1 2at 630.172 kb on - strand, within Rru_A0535at 630.172 kb on - strand, within Rru_A0535at 630.182 kb on + strand, within Rru_A0535at 630.191 kb on + strand, within Rru_A0535at 630.191 kb on + strand, within Rru_A0535at 630.270 kb on + strand, within Rru_A0535at 630.270 kb on + strand, within Rru_A0535at 630.271 kb on - strand, within Rru_A0535at 630.271 kb on - strand, within Rru_A0535at 630.271 kb on - strand, within Rru_A0535at 630.309 kb on + strand, within Rru_A0535at 630.309 kb on + strand, within Rru_A0535at 630.310 kb on - strand, within Rru_A0535at 630.327 kb on + strand, within Rru_A0535at 630.328 kb on - strand, within Rru_A0535at 630.328 kb on - strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.486 kb on + strand, within Rru_A0535at 630.487 kb on - strand, within Rru_A0535at 630.487 kb on - strand, within Rru_A0535at 630.705 kb on + strand, within Rru_A0535at 630.705 kb on + strand, within Rru_A0535at 630.705 kb on + strand, within Rru_A0535at 630.706 kb on - strand, within Rru_A0535at 630.706 kb on - strand, within Rru_A0535at 630.706 kb on - strand, within Rru_A0535at 630.720 kb on + strand, within Rru_A0535at 630.720 kb on + strand, within Rru_A0535at 630.720 kb on + strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.721 kb on - strand, within Rru_A0535at 630.947 kb on + strandat 630.947 kb on + strandat 630.948 kb on - strandat 630.948 kb on - strandat 631.004 kb on + strandat 631.083 kb on + strandat 631.083 kb on + strandat 631.083 kb on + strandat 631.084 kb on - strandat 631.219 kb on - strand, within Rru_A0536at 631.270 kb on + strand, within Rru_A0536at 631.271 kb on - strand, within Rru_A0536at 631.271 kb on - strand, within Rru_A0536at 631.283 kb on + strand, within Rru_A0536at 631.283 kb on + strand, within Rru_A0536at 631.283 kb on + strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.284 kb on - strand, within Rru_A0536at 631.430 kb on + strand, within Rru_A0536at 631.430 kb on + strand, within Rru_A0536at 631.430 kb on + strand, within Rru_A0536at 631.431 kb on - strand, within Rru_A0536at 631.432 kb on + strand, within Rru_A0536at 631.628 kb on + strand, within Rru_A0536at 631.628 kb on + strand, within Rru_A0536at 631.628 kb on + strand, within Rru_A0536at 631.629 kb on - strand, within Rru_A0536at 631.629 kb on - strand, within Rru_A0536at 631.630 kb on + strand, within Rru_A0536at 631.630 kb on + strand, within Rru_A0536at 631.631 kb on - strand, within Rru_A0536at 631.631 kb on - strand, within Rru_A0536at 631.838 kb on + strand, within Rru_A0536at 631.838 kb on + strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 631.839 kb on - strand, within Rru_A0536at 632.116 kb on - strandat 632.130 kb on - strandat 632.383 kb on - strand, within Rru_A0537at 632.383 kb on - strand, within Rru_A0537at 632.626 kb on - strand, within Rru_A0537at 632.626 kb on - strand, within Rru_A0537at 632.856 kb on - strand, within Rru_A0537at 632.856 kb on - strand, within Rru_A0537

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Per-strain Table

Position Strand Gene LocusTag Fraction SMN_rich_anaerobic
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630,172 - Rru_A0535 0.11 -0.2
630,172 - Rru_A0535 0.11 -0.1
630,182 + Rru_A0535 0.12 +0.4
630,191 + Rru_A0535 0.13 -0.7
630,191 + Rru_A0535 0.13 -0.2
630,270 + Rru_A0535 0.22 -0.1
630,270 + Rru_A0535 0.22 +0.1
630,271 - Rru_A0535 0.22 -0.3
630,271 - Rru_A0535 0.22 -0.8
630,271 - Rru_A0535 0.22 +0.6
630,309 + Rru_A0535 0.26 -0.3
630,309 + Rru_A0535 0.26 -0.7
630,310 - Rru_A0535 0.26 -0.2
630,327 + Rru_A0535 0.28 -0.1
630,328 - Rru_A0535 0.28 +0.0
630,328 - Rru_A0535 0.28 -0.3
630,486 + Rru_A0535 0.46 -1.4
630,486 + Rru_A0535 0.46 +2.3
630,486 + Rru_A0535 0.46 +0.1
630,486 + Rru_A0535 0.46 +0.3
630,486 + Rru_A0535 0.46 +0.1
630,486 + Rru_A0535 0.46 -0.4
630,486 + Rru_A0535 0.46 -0.5
630,486 + Rru_A0535 0.46 -0.7
630,487 - Rru_A0535 0.46 -0.5
630,487 - Rru_A0535 0.46 -0.3
630,705 + Rru_A0535 0.70 +0.1
630,705 + Rru_A0535 0.70 -2.0
630,705 + Rru_A0535 0.70 +0.9
630,706 - Rru_A0535 0.70 -0.9
630,706 - Rru_A0535 0.70 +0.2
630,706 - Rru_A0535 0.70 -0.2
630,720 + Rru_A0535 0.71 -0.4
630,720 + Rru_A0535 0.71 -0.3
630,720 + Rru_A0535 0.71 -0.4
630,721 - Rru_A0535 0.71 -0.3
630,721 - Rru_A0535 0.71 -0.0
630,721 - Rru_A0535 0.71 +0.3
630,721 - Rru_A0535 0.71 -0.1
630,721 - Rru_A0535 0.71 -0.5
630,947 + -0.1
630,947 + +1.4
630,948 - -0.5
630,948 - -0.7
631,004 + +0.4
631,083 + -0.2
631,083 + -0.0
631,083 + +0.5
631,084 - +0.1
631,219 - Rru_A0536 0.11 +0.1
631,270 + Rru_A0536 0.17 -0.5
631,271 - Rru_A0536 0.17 +0.4
631,271 - Rru_A0536 0.17 -1.2
631,283 + Rru_A0536 0.18 -0.5
631,283 + Rru_A0536 0.18 -0.4
631,283 + Rru_A0536 0.18 +0.4
631,284 - Rru_A0536 0.18 -0.3
631,284 - Rru_A0536 0.18 -0.9
631,284 - Rru_A0536 0.18 -1.2
631,284 - Rru_A0536 0.18 -0.1
631,430 + Rru_A0536 0.34 -0.2
631,430 + Rru_A0536 0.34 -0.7
631,430 + Rru_A0536 0.34 -0.4
631,431 - Rru_A0536 0.34 -0.4
631,432 + Rru_A0536 0.34 +0.4
631,628 + Rru_A0536 0.56 -0.1
631,628 + Rru_A0536 0.56 -0.1
631,628 + Rru_A0536 0.56 -0.4
631,629 - Rru_A0536 0.56 +0.4
631,629 - Rru_A0536 0.56 -0.1
631,630 + Rru_A0536 0.56 -0.6
631,630 + Rru_A0536 0.56 -0.3
631,631 - Rru_A0536 0.56 -0.5
631,631 - Rru_A0536 0.56 +0.4
631,838 + Rru_A0536 0.79 +0.0
631,838 + Rru_A0536 0.79 +0.1
631,839 - Rru_A0536 0.79 -0.4
631,839 - Rru_A0536 0.79 +0.4
631,839 - Rru_A0536 0.79 +0.0
631,839 - Rru_A0536 0.79 -0.4
631,839 - Rru_A0536 0.79 -1.2
631,839 - Rru_A0536 0.79 +0.7
631,839 - Rru_A0536 0.79 -0.5
631,839 - Rru_A0536 0.79 +0.4
632,116 - +0.1
632,130 - +0.4
632,383 - Rru_A0537 0.17 -0.2
632,383 - Rru_A0537 0.17 +1.0
632,626 - Rru_A0537 0.37 +0.4
632,626 - Rru_A0537 0.37 -0.6
632,856 - Rru_A0537 0.55 -1.3
632,856 - Rru_A0537 0.55 -1.5

Or see this region's nucleotide sequence